Schema for scBlastTab
  Database: mm9    Primary Table: scBlastTab    Row Count: 2,244   Data last updated: 2011-04-19
Format description: Blast alignments of S. cerevisiae genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query uc007wyt.1varchar(255) values Name of sequence in this assembly (query)
target YCR002Cvarchar(255) values Name of sequence in other assembly (target)
identity 47.59float range Percent identity
aliLength 290int(10) unsigned range Length of alignment
mismatch 150int(10) unsigned range Number of mismatches
gapOpen 2int(10) unsigned range Number of gap openings
qStart 27int(10) unsigned range Start in query (0 based)
qEnd 316int(10) unsigned range End in query (non-inclusive)
tStart 11int(10) unsigned range Start in target (0 based)
tEnd 300int(10) unsigned range End in target (non-inclusive)
eValue 2e-77double range Expectation value
bitScore 283double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via scBlastTab.query)
      knownGeneV39.ceBlastTab.query (via scBlastTab.query)
      knownGeneV39.dmBlastTab.query (via scBlastTab.query)
      knownGeneV39.drBlastTab.query (via scBlastTab.query)
      knownGeneV39.foldUtr3.name (via scBlastTab.query)
      knownGeneV39.foldUtr5.name (via scBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via scBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via scBlastTab.query)
      knownGeneV39.kgAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgColor.kgID (via scBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via scBlastTab.query)
      knownGeneV39.kgXref.kgID (via scBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via scBlastTab.query)
      knownGeneV39.knownBlastTab.query (via scBlastTab.query)
      knownGeneV39.knownBlastTab.target (via scBlastTab.query)
      knownGeneV39.knownCanonical.protein (via scBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via scBlastTab.query)
      knownGeneV39.knownCds.name (via scBlastTab.query)
      knownGeneV39.knownGene.name (via scBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via scBlastTab.query)
      knownGeneV39.knownGenePep.name (via scBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via scBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via scBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via scBlastTab.query)
      knownGeneV39.knownToHprd.name (via scBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via scBlastTab.query)
      knownGeneV39.knownToMrna.name (via scBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via scBlastTab.query)
      knownGeneV39.knownToMupit.name (via scBlastTab.query)
      knownGeneV39.knownToPfam.name (via scBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via scBlastTab.query)
      knownGeneV39.knownToSuper.gene (via scBlastTab.query)
      knownGeneV39.knownToTag.name (via scBlastTab.query)
      knownGeneV39.knownToU133.name (via scBlastTab.query)
      knownGeneV39.knownToU95.name (via scBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via scBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via scBlastTab.query)
      knownGeneV39.mmBlastTab.query (via scBlastTab.query)
      knownGeneV39.rnBlastTab.query (via scBlastTab.query)
      knownGeneV39.scBlastTab.query (via scBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via scBlastTab.query)
      mm9.affyGnfU74ADistance.query (via scBlastTab.query)
      mm9.affyGnfU74ADistance.target (via scBlastTab.query)
      mm9.affyGnfU74BDistance.query (via scBlastTab.query)
      mm9.affyGnfU74BDistance.target (via scBlastTab.query)
      mm9.affyGnfU74CDistance.query (via scBlastTab.query)
      mm9.affyGnfU74CDistance.target (via scBlastTab.query)
      mm9.bioCycPathway.kgID (via scBlastTab.query)
      mm9.ccdsKgMap.geneId (via scBlastTab.query)
      mm9.ceBlastTab.query (via scBlastTab.query)
      mm9.dmBlastTab.query (via scBlastTab.query)
      mm9.drBlastTab.query (via scBlastTab.query)
      mm9.foldUtr3.name (via scBlastTab.query)
      mm9.foldUtr5.name (via scBlastTab.query)
      mm9.gnfAtlas2Distance.query (via scBlastTab.query)
      mm9.gnfAtlas2Distance.target (via scBlastTab.query)
      mm9.hgBlastTab.query (via scBlastTab.query)
      mm9.keggPathway.kgID (via scBlastTab.query)
      mm9.kgAlias.kgID (via scBlastTab.query)
      mm9.kgColor.kgID (via scBlastTab.query)
      mm9.kgProtAlias.kgID (via scBlastTab.query)
      mm9.kgProtMap2.qName (via scBlastTab.query)
      mm9.kgSpAlias.kgID (via scBlastTab.query)
      mm9.kgTargetAli.qName (via scBlastTab.query)
      mm9.kgTxInfo.name (via scBlastTab.query)
      mm9.kgXref.kgID (via scBlastTab.query)
      mm9.knownBlastTab.query (via scBlastTab.query)
      mm9.knownBlastTab.target (via scBlastTab.query)
      mm9.knownCanonical.protein (via scBlastTab.query)
      mm9.knownCanonical.transcript (via scBlastTab.query)
      mm9.knownGene.name (via scBlastTab.query)
      mm9.knownGeneMrna.name (via scBlastTab.query)
      mm9.knownGenePep.name (via scBlastTab.query)
      mm9.knownIsoforms.transcript (via scBlastTab.query)
      mm9.knownToAllenBrain.name (via scBlastTab.query)
      mm9.knownToEnsembl.name (via scBlastTab.query)
      mm9.knownToGnfAtlas2.name (via scBlastTab.query)
      mm9.knownToKeggEntrez.name (via scBlastTab.query)
      mm9.knownToLocusLink.name (via scBlastTab.query)
      mm9.knownToPfam.name (via scBlastTab.query)
      mm9.knownToRefSeq.name (via scBlastTab.query)
      mm9.knownToSuper.gene (via scBlastTab.query)
      mm9.knownToVisiGene.name (via scBlastTab.query)
      mm9.rnBlastTab.query (via scBlastTab.query)
      mm9.ucscScop.ucscId (via scBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc007wyt.1YCR002C47.59290150227316113002e-77283
uc008nys.2YGL238W37.938915221658934539282e-153538
uc007yhj.1YDR135C40.931466755231101528109151201004
uc008ops.1YNL155W24.8923315763223112390.000000000000768.9
uc007wxz.1YMR284W22.655213341922495185180.00000000000000777
uc008nyq.1YGR262C37.08240126729244212612e-27117
uc007yfx.2YPL022W29.51100355424199049410623e-102367
uc008opo.2YHR046C35.5231139323245262568.000000000000001e-39155
uc007xqd.1YDL022W49.2734116324335353761e-90327
uc008nxt.1YCR037C27.74137871371624826190.00000000000366.6

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.