Schema for all_est
  Database: sacCer1    Primary Table: all_est    Row Count: 34,988   Data last updated: 2016-04-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 442int(10) unsigned range Number of bases that match that aren't repeats
misMatches 5int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 9int(10) unsigned range Number of inserts in query
qBaseInsert 25int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 15int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AA417479varchar(255) values Query sequence name
qSize 472int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 472int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 230208int(10) unsigned range Target sequence size
tStart 51171int(10) unsigned range Alignment start position in target
tEnd 51633int(10) unsigned range Alignment end position in target
blockCount 11int(10) unsigned range Number of blocks in alignment
blockSizes 14,5,4,12,16,8,13,15,11,20,...longblob   Size of each block
qStarts 0,23,29,34,54,71,80,94,110,...longblob   Start of each block in query.
tStarts 51171,51193,51198,51202,512...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      sacCer1.all_mrna.qName (via all_est.qName)
      sacCer1.est.qName (via all_est.qName)
      sacCer1.estOrientInfo.name (via all_est.qName)
      sacCer1.intronEst.qName (via all_est.qName)
      sacCer1.xenoRefGene.name (via all_est.qName)
      sacCer1.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585442500925315-AA4174794720472chr123020851171516331114,5,4,12,16,8,13,15,11,20,329,0,23,29,34,54,71,80,94,110,123,143,51171,51193,51198,51202,51220,51236,51244,51257,51272,51283,51304,
58645710071435-AA4174804720472chr123020814659314705685,4,10,8,10,20,40,361,0,6,11,25,34,46,70,111,146593,146598,146602,146614,146622,146633,146655,146695,
5863810011124+AA4174813907390chr1230208160868161254324,342,16,7,32,374,160868,160895,161238,
5862795030000-AA4174772870287chr12302081879341882211287,0,187934,
5863590002200+AA4174743610361chr107454461362451366043312,40,7,0,313,354,136245,136557,136597,
5864031015711+AA4174884120412chr107454461477771481836358,19,11,5,6,6,0,359,381,393,399,406,147777,148135,148155,148166,148171,148177,
5874415004411+AA4174684500450chr107454463284543289016337,55,10,6,27,11,0,338,394,404,411,439,328454,328791,328846,328857,328863,328890,
5883981000011-AA4174983990399chr10745446450627451027227,372,0,27,450627,450655,
5893811012213+AA4174723850385chr107454466049936053793359,10,14,0,360,371,604993,605355,605365,
585670000000-AA41749067067chr116664458573385800167,0,85733,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.