Schema for estOrientInfo
  Database: sacCer1    Primary Table: estOrientInfo    Row Count: 34,988   Data last updated: 2016-04-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 51171int(10) unsigned range Start position in chromosome
chromEnd 51633int(10) unsigned range End position in chromosome
name AA417479varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      sacCer1.all_est.qName (via estOrientInfo.name)
      sacCer1.est.qName (via estOrientInfo.name)
      sacCer1.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr15117151633AA41747900000
586chr1146593147056AA41748000000
586chr1160868161254AA417481000018
586chr1187934188221AA41747700000
586chr10136245136604AA41747400000
586chr10147777148183AA41748800000
587chr10328454328901AA41746800000
588chr10450627451027AA41749800000
589chr10604993605379AA41747200000
585chr118573385800AA41749000000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.