Schema for all_est
  Database: xenTro7    Primary Table: all_est    Row Count: 1,273,746   Data last updated: 2015-12-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 651int(10) unsigned Number of bases that match that aren't repeats
misMatches 3int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 1int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 2391int(10) unsigned Number of bases inserted in target
strand -char(2) + or - for strand. First character query, second target (optional)
qName AL635959varchar(255) Query sequence name
qSize 655int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 655int(10) unsigned Alignment end position in query
tName KB021649varchar(255) Target sequence name
tSize 215906545int(10) unsigned Target sequence size
tStart 36745int(10) unsigned Alignment start position in target
tEnd 39791int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 555,100,longblob Size of each block
qStarts 0,555,longblob Start of each block in query.
tStarts 36745,39691,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      xenTro7.all_mrna.qName (via all_est.qName)
      xenTro7.estOrientInfo.name (via all_est.qName)
      xenTro7.intronEst.qName (via all_est.qName)
      xenTro7.refGene.name (via all_est.qName)
      xenTro7.refSeqAli.qName (via all_est.qName)
      xenTro7.xenoRefGene.name (via all_est.qName)
      xenTro7.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5856513010012391-AL6359596550655KB02164921590654536745397912555,100,0,555,36745,39691,
58566300100420388-AL6623726640664KB02164921590654539760608125149,119,138,127,131,0,149,268,406,533,39760,42987,46525,46757,60681,
5851451011134-AL6424981480148KB021649215906545116444116595518,26,53,11,39,0,19,45,98,109,116444,116462,116490,116544,116556,
5852810000011-AL7761882810281KB021649215906545116444116726256,225,0,56,116444,116501,
5855211001266498-AL6550565240524KB021649215906545120113127133747,125,98,153,75,14,10,0,47,172,270,423,498,514,120113,123411,125436,125892,127032,127108,127123,
5856301001143111-AL6291316320632KB0216492159065451258941296366151,164,155,66,52,43,0,151,315,470,537,589,125894,127032,128024,129305,129371,129593,
5861501001422842-AL7894641550155KB021649215906545147872150865381,63,7,0,81,148,147872,150790,150858,
58634702900000+AL8942503760376KB0216492159065451799211802971376,0,179921,
58631062801100+AL7799873450345KB02164921590654517993318027726,338,0,7,179933,179939,
5864301200346115+AL9641434460446KB02164921590654518038618094389,16,38,53,185,19,31,91,0,9,27,65,119,305,324,355,180386,180434,180450,180528,180597,180798,180819,180852,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.