Schema for all_mrna
  Database: xenTro7    Primary Table: all_mrna    Row Count: 22,706   Data last updated: 2020-05-09
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 971int(10) unsigned range Number of bases that match that aren't repeats
misMatches 9int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 733474int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName BC159143varchar(255) values Query sequence name
qSize 3063int(10) unsigned range Query sequence size
qStart 1945int(10) unsigned range Alignment start position in query
qEnd 2925int(10) unsigned range Alignment end position in query
tName KB021649varchar(255) values Target sequence name
tSize 215906545int(10) unsigned range Target sequence size
tStart 27473int(10) unsigned range Alignment start position in target
tEnd 761927int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 97,226,192,465,longblob   Size of each block
qStarts 138,235,461,653,longblob   Start of each block in query.
tStarts 27473,27663,386798,761462,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      xenTro7.all_est.qName (via all_mrna.qName)
      xenTro7.mgcFullMrna.qName (via all_mrna.qName)
      xenTro7.mgcGenes.name (via all_mrna.qName)
      xenTro7.mrnaOrientInfo.name (via all_mrna.qName)
      xenTro7.refGene.name (via all_mrna.qName)
      xenTro7.refSeqAli.qName (via all_mrna.qName)
      xenTro7.xenoRefGene.name (via all_mrna.qName)
      xenTro7.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
73971900003733474-BC159143306319452925KB02164921590654527473761927497,226,192,465,138,235,461,653,27473,27663,386798,761462,
585259210000522779-CR855446261202593KB021649215906545354406081261860,218,119,138,127,131,19,1879,2097,2216,2354,2481,35440,39691,42987,46525,46757,60681,
585113120000522779-BC158298114601133KB02164921590654536911608236389,218,119,138,127,142,13,402,620,739,877,1004,36911,39691,42987,46525,46757,60681,
7335855201382630826-BC088522365803630KB0216492159065451164421508602747,264,102,201,90,125,98,153,164,155,118,138,76,149,123,178,78,102,59,121,164,129,169,180,117,222,70,28,75,339,441,642,732,857,955,1108,1272,1427,1545,1683,1759,1908,2031,2247,2325,2427,2486,2607,2771,2900,3069,3249,3366,3588,116442,116490,116993,117367,120070,123411,125436,125892,127032,128024,129305,129593,129821,130550,131112,131368,141195,141603,14 ...
586195861700315823448+BC124046215502149KB0216492159065451805112060931117,12,15,131,240,87,98,135,1093,159,147,0,17,29,51,189,429,516,614,749,1843,2002,180511,180529,180543,180951,181082,198873,200179,203020,204692,205785,205946,
586327010320002626878+CU075597331203312KB0216492159065452184482486382791,134,78,111,154,78,58,101,89,68,190,208,269,170,217,40,193,67,196,92,48,79,215,100,108,68,90,0,91,225,303,414,568,646,704,805,894,962,1152,1360,1629,1799,2016,2056,2249,2316,2512,2604,2652,2731,2946,3046,3154,3222,218448,231364,232759,233686,234555,234792,234960,235466,236053,237291,237508,238653,239450,240051,240396,242441,243634,244198,24 ...
73123141712877310967-BC061422215802130KB0216492159065452543452665655103,406,320,255,169,28,145,551,1734,1989,254345,254448,254863,263572,266396,
58721512000056000+CR7610542246692222KB021649215906545302785310938641,125,894,189,102,802,69,110,235,1129,1318,1420,302785,304033,305246,308050,309356,310136,
58723582000056000+BC07535625041162476KB021649215906545302785311145641,125,894,189,102,1009,116,157,282,1176,1365,1467,302785,304033,305246,308050,309356,310136,
58719760350001700+BC0755032115612072KB0216492159065453385193412302147,1864,61,208,338519,339366,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.