Human Gene ABCB7 (ENST00000373394.8_16) from GENCODE V47lift37
  Description: ATP binding cassette subfamily B member 7, transcript variant 2 (from RefSeq NM_001271696.3)
Gencode Transcript: ENST00000373394.8_16
Gencode Gene: ENSG00000131269.19_22
Transcript (Including UTRs)
   Position: hg19 chrX:74,270,883-74,376,118 Size: 105,236 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg19 chrX:74,273,205-74,376,107 Size: 102,903 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:74,270,883-74,376,118)mRNA (may differ from genome)Protein (752 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ABCB7_HUMAN
DESCRIPTION: RecName: Full=ATP-binding cassette sub-family B member 7, mitochondrial; AltName: Full=ATP-binding cassette transporter 7; Short=ABC transporter 7 protein; Flags: Precursor;
FUNCTION: Could be involved in the transport of heme from the mitochondria to the cytosol. Plays a central role in the maturation of cytosolic iron-sulfur (Fe/S) cluster-containing proteins.
SUBUNIT: Homodimer or heterodimer (Potential).
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Multi-pass membrane protein (Potential).
DISEASE: Defects in ABCB7 are the cause of X-linked sideroblastic anemia with ataxia (ASAT) [MIM:301310]. ASAT is a recessive disorder characterized by an infantile to early childhood onset of nonprogressive cerebellar ataxia and mild anemia with hypochromia and microcytosis.
SIMILARITY: Belongs to the ABC transporter superfamily. ABCB family. Heavy Metal importer (TC 3.A.1.210) subfamily.
SIMILARITY: Contains 1 ABC transmembrane type-1 domain.
SIMILARITY: Contains 1 ABC transporter domain.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ABCB7";
WEB RESOURCE: Name=ABCMdb; Note=Database for mutations in ABC proteins; URL="http://abcmutations.hegelab.org/proteinDetails?uniprot_id=O75027";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ABCB7
Diseases sorted by gene-association score: anemia, sideroblastic, with ataxia* (1550), x-linked sideroblastic anemia with ataxia* (528), sideroblastic anemia (22), anemia, sideroblastic, 1 (17), atransferrinemia (9), cerebellar ataxia (9), alcohol abuse (8), congenital disorder of glycosylation, type ia (7), viral hepatitis (6), sleeping sickness (5), liver disease (4), muscular dystrophy, rigid spine, 1 (4), substance abuse (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.65 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 371.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -575.002322-0.248 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003593 - AAA+_ATPase
IPR003439 - ABC_transporter-like
IPR017871 - ABC_transporter_CS
IPR017940 - ABC_transporter_type1
IPR001140 - ABC_transptr_TM_dom
IPR011527 - ABC_transptrTM_dom_typ1

Pfam Domains:
PF00005 - ABC transporter
PF00664 - ABC transporter transmembrane region

SCOP Domains:
75217 - alpha/beta knot
51905 - FAD/NAD(P)-binding domain
52540 - P-loop containing nucleoside triphosphate hydrolases
53795 - PEP carboxykinase-like
90123 - ABC transporter transmembrane region

ModBase Predicted Comparative 3D Structure on O75027
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details  Gene Details 
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 RGD  WormBase 
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0005524 ATP binding
GO:0015232 heme transporter activity
GO:0016887 ATPase activity
GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Biological Process:
GO:0006879 cellular iron ion homeostasis
GO:0015886 heme transport
GO:0055085 transmembrane transport

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC006323 - Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 7, mRNA (cDNA clone MGC:12887 IMAGE:4138236), complete cds.
AB005289 - Homo sapiens mRNA for ABC transporter 7 protein, complete cds.
BX537833 - Homo sapiens mRNA; cDNA DKFZp686K20196 (from clone DKFZp686K20196); complete cds.
AF038950 - Homo sapiens ATP binding cassette transporter mRNA, complete cds.
AF078777 - Homo sapiens ABC transporter (ATM1) mRNA, partial cds; nuclear gene for mitochondrial product.
AF133659 - Homo sapiens ATP-binding cassette 7 iron transporter (ABC7) mRNA, complete cds; nuclear gene for mitochondrial product.
BT009918 - Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 7 mRNA, complete cds.
DQ890692 - Synthetic construct clone IMAGE:100003322; FLH165176.01X; RZPDo839G11158D ATP-binding cassette, sub-family B (MDR/TAP), member 7 (ABCB7) gene, encodes complete protein.
EU176476 - Synthetic construct Homo sapiens clone IMAGE:100011340; FLH165175.01L; RZPDo839E01253D ATP-binding cassette, sub-family B (MDR/TAP), member 7 (ABCB7) gene, encodes complete protein.
KU177872 - Homo sapiens ATP-binding cassette sub-family B member 7 isoform 1 (ABCB7) mRNA, partial cds.
KU177873 - Homo sapiens ATP-binding cassette sub-family B member 7 isoform 3 (ABCB7) mRNA, complete cds, alternatively spliced.
KU177874 - Homo sapiens ATP-binding cassette sub-family B member 7 isoform 4 (ABCB7) mRNA, partial cds, alternatively spliced.
KU177875 - Homo sapiens ATP-binding cassette sub-family B member 7 isoform 5 (ABCB7) mRNA, complete cds, alternatively spliced.
AK294657 - Homo sapiens cDNA FLJ53391 partial cds, highly similar to ATP-binding cassette sub-family B member 7, mitochondrial precursor.
AK307414 - Homo sapiens cDNA, FLJ97362.
AK001418 - Homo sapiens cDNA FLJ10556 fis, clone NT2RP2002479, highly similar to ATP-binding cassette sub-family B member 7, mitochondrial precursor.
CU675349 - Synthetic construct Homo sapiens gateway clone IMAGE:100020541 5' read ABCB7 mRNA.
U66679 - Homo sapiens clone EST140535 mRNA sequence.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O75027 (Reactome details) participates in the following event(s):

R-HSA-382560 ABC7, mABC1 and mABC2 mediate heme transport
R-HSA-1369007 Mitochondrial ABC transporters
R-HSA-382556 ABC-family proteins mediated transport
R-HSA-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: ABC7, ABCB7 , ABCB7_HUMAN, ENST00000373394.1, ENST00000373394.2, ENST00000373394.3, ENST00000373394.4, ENST00000373394.5, ENST00000373394.6, ENST00000373394.7, G3XAC4, NM_001271696, O75027, O75345, Q5VWY7, Q5VWY8, Q9BRE1, Q9UND1, Q9UP01, uc318ksv.1, uc318ksv.2
UCSC ID: ENST00000373394.8_16
RefSeq Accession: NM_001271696.3
Protein: O75027 (aka ABCB7_HUMAN or ABC7_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.