Human Gene ACOT8 (ENST00000217455.9_7) from GENCODE V47lift37
  Description: acyl-CoA thioesterase 8 (from RefSeq NM_005469.4)
Gencode Transcript: ENST00000217455.9_7
Gencode Gene: ENSG00000101473.17_11
Transcript (Including UTRs)
   Position: hg19 chr20:44,470,360-44,486,031 Size: 15,672 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr20:44,470,477-44,485,954 Size: 15,478 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:44,470,360-44,486,031)mRNA (may differ from genome)Protein (319 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACOT8_HUMAN
DESCRIPTION: RecName: Full=Acyl-coenzyme A thioesterase 8; EC=3.1.2.27; AltName: Full=Acyl-CoA thioesterase 8; AltName: Full=Choloyl-coenzyme A thioesterase; AltName: Full=HIV-Nef-associated acyl-CoA thioesterase; AltName: Full=PTE-2; AltName: Full=Peroxisomal acyl-coenzyme A thioester hydrolase 1; Short=PTE-1; AltName: Full=Peroxisomal long-chain acyl-CoA thioesterase 1; AltName: Full=Thioesterase II; Short=hACTE-III; Short=hACTEIII; Short=hTE;
FUNCTION: Acyl-CoA thioesterases are a group of enzymes that catalyze the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. May mediate Nef-induced down-regulation of CD4. Major thioesterase in peroxisomes. Competes with BAAT (Bile acid CoA: amino acid N- acyltransferase) for bile acid-CoA substrate (such as chenodeoxycholoyl-CoA). Shows a preference for medium-length fatty acyl-CoAs (By similarity). May be involved in the metabolic regulation of peroxisome proliferation.
CATALYTIC ACTIVITY: Choloyl-CoA + H(2)O = cholate + CoA.
SUBUNIT: Interacts with HIV-1 Nef.
INTERACTION: P04601:nef (xeno); NbExp=5; IntAct=EBI-1237371, EBI-6164028;
SUBCELLULAR LOCATION: Peroxisome.
TISSUE SPECIFICITY: Detected in a T-cell line (at protein level). Ubiquitous.
INDUCTION: Regulated by peroxisome proliferator (such as Clofibrate), via the peroxisome proliferator-activated receptors (PPARs) (By similarity).
SIMILARITY: Belongs to the C/M/P thioester hydrolase family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ACOT8
Diseases sorted by gene-association score: von economo's disease (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.90 RPKM in Adrenal Gland
Total median expression: 569.87 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -30.3077-0.394 Picture PostScript Text
3' UTR -31.00117-0.265 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003703 - Acyl_CoA_thio

Pfam Domains:
PF02551 - Acyl-CoA thioesterase
PF13622 - Thioesterase-like superfamily

SCOP Domains:
54637 - Thioesterase/thiol ester dehydrase-isomerase

ModBase Predicted Comparative 3D Structure on O14734
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details  Gene DetailsGene Details
Gene SorterGene Sorter  Gene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003986 acetyl-CoA hydrolase activity
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0016289 CoA hydrolase activity
GO:0016290 palmitoyl-CoA hydrolase activity
GO:0016787 hydrolase activity
GO:0033882 choloyl-CoA hydrolase activity
GO:0047617 acyl-CoA hydrolase activity
GO:0052689 carboxylic ester hydrolase activity
GO:0052815 medium-chain acyl-CoA hydrolase activity
GO:0052816 long-chain acyl-CoA hydrolase activity

Biological Process:
GO:0006625 protein targeting to peroxisome
GO:0006637 acyl-CoA metabolic process
GO:0006699 bile acid biosynthetic process
GO:0007031 peroxisome organization
GO:0009062 fatty acid catabolic process
GO:0016032 viral process
GO:0016559 peroxisome fission
GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase
GO:0036109 alpha-linolenic acid metabolic process
GO:0043649 dicarboxylic acid catabolic process
GO:0045225 negative regulation of CD4 biosynthetic process

Cellular Component:
GO:0005737 cytoplasm
GO:0005777 peroxisome
GO:0005782 peroxisomal matrix
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AF014404 - Homo sapiens HIV-Nef associated acyl CoA thioesterase (hNAACTE) mRNA, complete cds.
X86032 - H.sapiens mRNA for thioesterase II.
JD340632 - Sequence 321656 from Patent EP1572962.
BC117157 - Homo sapiens acyl-CoA thioesterase 8, mRNA (cDNA clone MGC:150766 IMAGE:40125708), complete cds.
BC117155 - Homo sapiens acyl-CoA thioesterase 8, mRNA (cDNA clone MGC:150764 IMAGE:40125706), complete cds.
JD358083 - Sequence 339107 from Patent EP1572962.
JD397474 - Sequence 378498 from Patent EP1572962.
JD064153 - Sequence 45177 from Patent EP1572962.
JD414113 - Sequence 395137 from Patent EP1572962.
HQ258192 - Synthetic construct Homo sapiens clone IMAGE:100072501 acyl-CoA thioesterase 8 (ACOT8) gene, encodes complete protein.
KJ892892 - Synthetic construct Homo sapiens clone ccsbBroadEn_02286 ACOT8 gene, encodes complete protein.
AF124264 - Homo sapiens peroxisomal acyl-CoA thioesterase (PTE1) mRNA, complete cds.
CR541771 - Homo sapiens full open reading frame cDNA clone RZPDo834C0630D for gene PTE1, peroxisomal acyl-CoA thioesterase; complete cds, incl. stopcodon.
CR541778 - Homo sapiens full open reading frame cDNA clone RZPDo834F0130D for gene PTE1, peroxisomal acyl-CoA thioesterase; complete cds, without stopcodon.
AK126206 - Homo sapiens cDNA FLJ44218 fis, clone THYMU3004157, moderately similar to Homo sapiens peroxisomal acyl-CoA thioesterase (PTE1).
AK056668 - Homo sapiens cDNA FLJ32106 fis, clone OCBBF2001408, highly similar to H.sapiens mRNA for thioesterase II.
AK298783 - Homo sapiens cDNA FLJ58040 complete cds, highly similar to Acyl-coenzyme A thioesterase 8 (EC 3.1.2.2).
AK296973 - Homo sapiens cDNA FLJ60669 complete cds, highly similar to Acyl-coenzyme A thioesterase 8 (EC 3.1.2.2).
AK292494 - Homo sapiens cDNA FLJ78565 complete cds.
JD134708 - Sequence 115732 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-5148 - acyl-CoA hydrolysis
PWY-5972 - stearate biosynthesis
PWY-5994 - palmitate biosynthesis (cytoplasm)
PWY-5996 - oleate biosynthesis
PWY-8042 - acylceramide biosynthesis

Reactome (by CSHL, EBI, and GO)

Protein O14734 (Reactome details) participates in the following event(s):

R-HSA-193385 Hydrolysis of choloyl-CoA to cholate and CoASH
R-HSA-390304 acetyl-CoA + H2O => acetate + CoASH
R-HSA-2066779 Conversion of DHA-CoA to docosahexaenoic acid (DHA)
R-HSA-9033233 PEX5S,L binds cargo proteins containing PTS1
R-HSA-5690042 Peroxisomal ACOT4,6,8 hydrolyse MCFA-CoA, LCFA-CoA
R-HSA-9033236 PEX5S,L:Cargo binds PEX13:PEX14 of PEX13:PEX14:PEX2:PEX10:PEX12 (Docking and Translocation Complex)
R-HSA-9033241 Peroxisomal protein import
R-HSA-193368 Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
R-HSA-389887 Beta-oxidation of pristanoyl-CoA
R-HSA-2046106 alpha-linolenic acid (ALA) metabolism
R-HSA-390247 Beta-oxidation of very long chain fatty acids
R-HSA-392499 Metabolism of proteins
R-HSA-192105 Synthesis of bile acids and bile salts
R-HSA-390918 Peroxisomal lipid metabolism
R-HSA-2046104 alpha-linolenic (omega3) and linoleic (omega6) acid metabolism
R-HSA-194068 Bile acid and bile salt metabolism
R-HSA-8978868 Fatty acid metabolism
R-HSA-8957322 Metabolism of steroids
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ACOT8_HUMAN, ACTEIII, ENST00000217455.1, ENST00000217455.2, ENST00000217455.3, ENST00000217455.4, ENST00000217455.5, ENST00000217455.6, ENST00000217455.7, ENST00000217455.8, NM_005469, O14734, O15261, PTE1 , Q17RX4, uc317cua.1, uc317cua.2
UCSC ID: ENST00000217455.9_7
RefSeq Accession: NM_005469.4
Protein: O14734 (aka ACOT8_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.