Human Gene ACTA2 (ENST00000224784.10_7) from GENCODE V47lift37
  Description: actin alpha 2, smooth muscle, transcript variant 2 (from RefSeq NM_001613.4)
Gencode Transcript: ENST00000224784.10_7
Gencode Gene: ENSG00000107796.14_13
Transcript (Including UTRs)
   Position: hg19 chr10:90,694,831-90,712,530 Size: 17,700 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr10:90,694,980-90,708,687 Size: 13,708 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:90,694,831-90,712,530)mRNA (may differ from genome)Protein (377 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACTA_HUMAN
DESCRIPTION: RecName: Full=Actin, aortic smooth muscle; AltName: Full=Alpha-actin-2; AltName: Full=Cell growth-inhibiting gene 46 protein; Flags: Precursor;
FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
SUBUNIT: Polymerization of globular actin (G-actin) leads to a structural filament (F-actin) in the form of a two-stranded helix. Each actin can bind to 4 others.
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton.
INDUCTION: Up-regulated in response to enterovirus 71 (EV71) infection.
PTM: Oxidation of Met-46 by MICALs (MICAL1, MICAL2 or MICAL3) to form methionine sulfoxide promotes actin filament depolymerization. Methionine sulfoxide is produced stereospecifically, but it is not known whether the (S)-S-oxide or the (R)-S-oxide is produced (By similarity).
DISEASE: Note=ACTA2 mutations predispose patients to a variety of diffuse and diverse vascular diseases, premature onset coronary artery disease (CAD), premature ischemic strokes and Moyamoya disease.
DISEASE: Defects in ACTA2 are the cause of familial aortic aneurysm thoracic type 6 (AAT6) [MIM:611788]. AATs are characterized by permanent dilation of the thoracic aorta usually due to degenerative changes in the aortic wall. They are primarily associated with a characteristic histologic appearance known as 'medial necrosis' or 'Erdheim cystic medial necrosis' in which there is degeneration and fragmentation of elastic fibers, loss of smooth muscle cells, and an accumulation of basophilic ground substance.
DISEASE: Defects in ACTA2 are the cause of Moyamoya disease type 5 (MYMY5) [MIM:614042]. Moyamoya disease is a progressive cerebral angiopathy characterized by bilateral intracranial carotid artery stenosis and telangiectatic vessels in the region of the basal ganglia. The abnormal vessels resemble a 'puff of smoke' (moyamoya) on cerebral angiogram. Affected individuals can develop transient ischemic attacks and/or cerebral infarction, and rupture of the collateral vessels can cause intracranial hemorrhage. Hemiplegia of sudden onset and epileptic seizures constitute the prevailing presentation in childhood, while subarachnoid bleeding occurs more frequently in adults.
DISEASE: Defects in ACTA2 are the cause of multisystemic smooth muscle dysfunction syndrome (MSMDYS) [MIM:613834]. MSMDYS is a syndrome characterized by dysfunction of smooth muscle cells throughout the body, leading to aortic and cerebrovascular disease, fixed dilated pupils, hypotonic bladder, malrotation, and hypoperistalsis of the gut and pulmonary hypertension.
MISCELLANEOUS: In vertebrates 3 main groups of actin isoforms, alpha, beta and gamma have been identified. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton and as mediators of internal cell motility.
SIMILARITY: Belongs to the actin family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ACTA2";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ACTA2
Diseases sorted by gene-association score: multisystemic smooth muscle dysfunction syndrome* (1690), moyamoya disease 5* (1329), aortic aneurysm, familial thoracic 6* (1231), acta2-related thoracic aortic aneurysms and aortic dissections* (500), connective tissue disease* (404), thoracic aortic aneurysms and aortic dissections* (133), aortic aneurysm (59), moyamoya disease* (49), aneurysm (49), scar contracture (18), prune belly syndrome (13), central retinal artery occlusion (13), aortic disease (11), loeys-dietz syndrome (10), char syndrome (9), artery disease (8), cerebral arterial disease (7), marfan syndrome (7), aortic aneurysm, familial thoracic 1 (7), ocular cicatricial pemphigoid (6), urofacial syndrome 1 (6), hemiplegia (5), pulmonary hypertension (2), cerebrovascular disease (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3484.84 RPKM in Artery - Tibial
Total median expression: 24277.64 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -15.4066-0.233 Picture PostScript Text
3' UTR -20.90149-0.140 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004000 - Actin-like
IPR020902 - Actin/actin-like_CS
IPR004001 - Actin_CS

Pfam Domains:
PF00022 - Actin

SCOP Domains:
53067 - Actin-like ATPase domain

ModBase Predicted Comparative 3D Structure on P62736
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0005524 ATP binding
GO:0019901 protein kinase binding

Biological Process:
GO:0006936 muscle contraction
GO:0008217 regulation of blood pressure
GO:0009615 response to virus
GO:0010628 positive regulation of gene expression
GO:0014829 vascular smooth muscle contraction
GO:0072144 glomerular mesangial cell development
GO:0090131 mesenchyme migration

Cellular Component:
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0015629 actin cytoskeleton
GO:0030027 lamellipodium
GO:0030175 filopodium
GO:0030485 smooth muscle contractile fiber
GO:0032991 macromolecular complex
GO:0044297 cell body
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  X13839 - Human mRNA for vascular smooth muscle alpha-actin.
AY692464 - Homo sapiens growth-inhibiting gene 46 mRNA, complete cds.
J05192 - Human alpha-actin (ACTA) mRNA, complete cds.
AK300664 - Homo sapiens cDNA FLJ52761 complete cds, highly similar to Actin, aortic smooth muscle.
BC093052 - Homo sapiens actin, alpha 2, smooth muscle, aorta, mRNA (cDNA clone MGC:111131 IMAGE:30351093), complete cds.
BC017554 - Homo sapiens actin, alpha 2, smooth muscle, aorta, mRNA (cDNA clone MGC:9221 IMAGE:3906861), complete cds.
CR536518 - Homo sapiens full open reading frame cDNA clone RZPDo834A1120D for gene ACTA2, actin, alpha 2, smooth muscle, aorta; complete cds, incl. stopcodon.
KJ890620 - Synthetic construct Homo sapiens clone ccsbBroadEn_00014 ACTA2 gene, encodes complete protein.
KR709329 - Synthetic construct Homo sapiens clone CCSBHm_00000376 ACTA2 (ACTA2) mRNA, encodes complete protein.
KR709330 - Synthetic construct Homo sapiens clone CCSBHm_00000378 ACTA2 (ACTA2) mRNA, encodes complete protein.
KR709331 - Synthetic construct Homo sapiens clone CCSBHm_00000385 ACTA2 (ACTA2) mRNA, encodes complete protein.
KR709332 - Synthetic construct Homo sapiens clone CCSBHm_00000390 ACTA2 (ACTA2) mRNA, encodes complete protein.
AK313294 - Homo sapiens cDNA, FLJ93806, Homo sapiens actin, alpha 2, smooth muscle, aorta (ACTA2), mRNA.
DQ892391 - Synthetic construct clone IMAGE:100005021; FLH185903.01X; RZPDo839G06148D actin, alpha 2, smooth muscle, aorta (ACTA2) gene, encodes complete protein.
DQ895606 - Synthetic construct Homo sapiens clone IMAGE:100010066; FLH185899.01L; RZPDo839G06147D actin, alpha 2, smooth muscle, aorta (ACTA2) gene, encodes complete protein.
AB463395 - Synthetic construct DNA, clone: pF1KB6585, Homo sapiens ACTA2 gene for actin, alpha 2, smooth muscle, aorta, without stop codon, in Flexi system.
CU676004 - Synthetic construct Homo sapiens gateway clone IMAGE:100017132 5' read ACTA2 mRNA.
MP202694 - Sequence 5 from Patent WO2019090263.
AK127229 - Homo sapiens cDNA FLJ45296 fis, clone BRHIP3003340.
AK300353 - Homo sapiens cDNA FLJ52755 complete cds, highly similar to Actin, aortic smooth muscle.
AK025094 - Homo sapiens cDNA: FLJ21441 fis, clone COL04422.
JD162089 - Sequence 143113 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P62736 (Reactome details) participates in the following event(s):

R-HSA-445705 Release Of ADP From Myosin
R-HSA-445699 ATP Hydrolysis By Myosin
R-HSA-445700 Myosin Binds ATP
R-HSA-445704 Calcium Binds Caldesmon
R-HSA-445355 Smooth Muscle Contraction
R-HSA-397014 Muscle contraction

-  Other Names for This Gene
  Alternate Gene Symbols: ACTA_HUMAN, ACTSA, ACTVS, B2R8A4, ENST00000224784.1, ENST00000224784.2, ENST00000224784.3, ENST00000224784.4, ENST00000224784.5, ENST00000224784.6, ENST00000224784.7, ENST00000224784.8, ENST00000224784.9, GIG46, NM_001613, P03996, P04108, P62736, Q6FI19, uc317dii.1, uc317dii.2
UCSC ID: ENST00000224784.10_7
RefSeq Accession: NM_001613.4
Protein: P62736 (aka ACTA_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ACTA2:
taa (Heritable Thoracic Aortic Disease Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.