Human Gene ACTBL2 (ENST00000423391.3_6) from GENCODE V47lift37
  Description: actin beta like 2 (from RefSeq NM_001017992.4)
Gencode Transcript: ENST00000423391.3_6
Gencode Gene: ENSG00000169067.4_9
Transcript (Including UTRs)
   Position: hg19 chr5:56,775,845-56,778,638 Size: 2,794 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr5:56,777,404-56,778,534 Size: 1,131 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:56,775,845-56,778,638)mRNA (may differ from genome)Protein (376 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACTBL_HUMAN
DESCRIPTION: RecName: Full=Beta-actin-like protein 2; AltName: Full=Kappa-actin;
FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells (By similarity).
SUBUNIT: Polymerization of globular actin (G-actin) leads to a structural filament (F-actin) in the form of a two-stranded helix. Each actin can bind to 4 others (By similarity). Interacts with PFN1 and PFDN1.
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton (By similarity).
PTM: Oxidation of Met-45 by MICALs (MICAL1, MICAL2 or MICAL3) to form methionine sulfoxide promotes actin filament depolymerization. Methionine sulfoxide is produced stereospecifically, but it is not known whether the (S)-S-oxide or the (R)-S-oxide is produced (By similarity).
MISCELLANEOUS: In vertebrates 3 main groups of actin isoforms, alpha, beta and gamma have been identified. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton and as mediators of internal cell motility.
SIMILARITY: Belongs to the actin family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.20 RPKM in Testis
Total median expression: 0.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -15.60104-0.150 Picture PostScript Text
3' UTR -306.701559-0.197 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004000 - Actin-like
IPR020902 - Actin/actin-like_CS
IPR004001 - Actin_CS

Pfam Domains:
PF00022 - Actin

SCOP Domains:
53067 - Actin-like ATPase domain

ModBase Predicted Comparative 3D Structure on Q562R1
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003674 molecular_function
GO:0005515 protein binding
GO:0005524 ATP binding

Biological Process:
GO:0008150 biological_process

Cellular Component:
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BX648504 - Homo sapiens mRNA; cDNA DKFZp686D0972 (from clone DKFZp686D0972).
BC137470 - Homo sapiens actin, beta-like 2, mRNA (cDNA clone MGC:169093 IMAGE:9021470), complete cds.
BC137473 - Homo sapiens actin, beta-like 2, mRNA (cDNA clone MGC:169096 IMAGE:9021473), complete cds.
KJ896103 - Synthetic construct Homo sapiens clone ccsbBroadEn_05497 ACTBL2 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: ACTBL_HUMAN, B2RPJ1, ENST00000423391.1, ENST00000423391.2, NM_001017992, Q562R1, Q562R2, Q562S9, Q562X8, uc319srs.1, uc319srs.2
UCSC ID: ENST00000423391.3_6
RefSeq Accession: NM_001017992.4
Protein: Q562R1 (aka ACTBL_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.