Human Gene ADAM18 (ENST00000265707.10_7) from GENCODE V47lift37
  Description: ADAM metallopeptidase domain 18, transcript variant 1 (from RefSeq NM_014237.3)
Gencode Transcript: ENST00000265707.10_7
Gencode Gene: ENSG00000168619.16_9
Transcript (Including UTRs)
   Position: hg19 chr8:39,442,087-39,587,584 Size: 145,498 Total Exon Count: 20 Strand: +
Coding Region
   Position: hg19 chr8:39,442,142-39,587,459 Size: 145,318 Coding Exon Count: 20 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:39,442,087-39,587,584)mRNA (may differ from genome)Protein (739 aa)
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-  Comments and Description Text from UniProtKB
  ID: ADA18_HUMAN
DESCRIPTION: RecName: Full=Disintegrin and metalloproteinase domain-containing protein 18; Short=ADAM 18; AltName: Full=Transmembrane metalloproteinase-like, disintegrin-like, and cysteine-rich protein III; Short=tMDC III; Flags: Precursor;
FUNCTION: Sperm surface membrane protein that may be involved in spermatogenesis and fertilization. This is a non catalytic metalloprotease-like protein (By similarity).
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Expressed specifically in testis.
DOMAIN: A tripeptide motif (ECD) within disintegrin-like domain could be involved in the binding to egg integrin receptor and thus could mediate sperm/egg binding (By similarity).
PTM: The prodomain and the metalloprotease-like domain are cleaved during the epididymal maturation of the spermatozoa (By similarity).
SIMILARITY: Contains 1 disintegrin domain.
SIMILARITY: Contains 1 EGF-like domain.
SIMILARITY: Contains 1 peptidase M12B domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.76 RPKM in Testis
Total median expression: 6.80 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -16.1055-0.293 Picture PostScript Text
3' UTR -16.90125-0.135 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006586 - ADAM_Cys-rich
IPR001762 - Blood-coag_inhib_Disintegrin
IPR018358 - Disintegrin_CS
IPR024079 - MetalloPept_cat_dom
IPR001590 - Peptidase_M12B
IPR002870 - Peptidase_M12B_N

Pfam Domains:
PF00200 - Disintegrin
PF01421 - Reprolysin (M12B) family zinc metalloprotease
PF01562 - Reprolysin family propeptide
PF08516 - ADAM cysteine-rich
PF13582 - Metallo-peptidase family M12B Reprolysin-like

SCOP Domains:
55486 - Metalloproteases ("zincins"), catalytic domain
57552 - Blood coagulation inhibitor (disintegrin)

ModBase Predicted Comparative 3D Structure on Q9Y3Q7
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004222 metalloendopeptidase activity
GO:0008237 metallopeptidase activity

Biological Process:
GO:0006508 proteolysis
GO:0007275 multicellular organism development
GO:0007283 spermatogenesis
GO:0030154 cell differentiation

Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK313961 - Homo sapiens cDNA, FLJ94607, Homo sapiens a disintegrin and metalloproteinase domain 18(ADAM18), mRNA.
AY358321 - Homo sapiens clone DNA84925 ADAM18 (UNQ858) mRNA, complete cds.
BC070279 - Homo sapiens ADAM metallopeptidase domain 18, mRNA (cDNA clone IMAGE:6102258), complete cds.
BC034624 - Homo sapiens ADAM metallopeptidase domain 18, mRNA (cDNA clone IMAGE:4827627), complete cds.
KJ892612 - Synthetic construct Homo sapiens clone ccsbBroadEn_02006 ADAM18 gene, encodes complete protein.
KJ892613 - Synthetic construct Homo sapiens clone ccsbBroadEn_02007 ADAM18 gene, encodes complete protein.
CU687082 - Synthetic construct Homo sapiens gateway clone IMAGE:100023102 5' read ADAM18 mRNA.
AJ133004 - Homo sapiens mRNA for tMDC III sperm protein.
BC121045 - Homo sapiens ADAM metallopeptidase domain 18, mRNA (cDNA clone MGC:149740 IMAGE:40117918), complete cds.
BC121046 - Homo sapiens ADAM metallopeptidase domain 18, mRNA (cDNA clone IMAGE:40117921), complete cds.
AK225744 - Homo sapiens mRNA for ADAM metallopeptidase domain 18 preproprotein variant, clone: TST08929.

-  Other Names for This Gene
  Alternate Gene Symbols: ADA18_HUMAN, B2R9Y0, ENST00000265707.1, ENST00000265707.2, ENST00000265707.3, ENST00000265707.4, ENST00000265707.5, ENST00000265707.6, ENST00000265707.7, ENST00000265707.8, ENST00000265707.9, NM_014237, Q0VAI4, Q6IRW9, Q6UXJ9, Q9Y3Q7, TMDC3, uc317idi.1, uc317idi.2, UNQ858/PRO1867
UCSC ID: ENST00000265707.10_7
RefSeq Accession: NM_014237.3
Protein: Q9Y3Q7 (aka ADA18_HUMAN or AD18_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.