Human Gene ADAM2 (ENST00000265708.9_8) from GENCODE V47lift37
  Description: ADAM metallopeptidase domain 2, transcript variant 1 (from RefSeq NM_001464.5)
Gencode Transcript: ENST00000265708.9_8
Gencode Gene: ENSG00000104755.16_12
Transcript (Including UTRs)
   Position: hg19 chr8:39,601,254-39,695,746 Size: 94,493 Total Exon Count: 21 Strand: -
Coding Region
   Position: hg19 chr8:39,602,379-39,695,704 Size: 93,326 Coding Exon Count: 20 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:39,601,254-39,695,746)mRNA (may differ from genome)Protein (735 aa)
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-  Comments and Description Text from UniProtKB
  ID: ADAM2_HUMAN
DESCRIPTION: RecName: Full=Disintegrin and metalloproteinase domain-containing protein 2; Short=ADAM 2; AltName: Full=Cancer/testis antigen 15; Short=CT15; AltName: Full=Fertilin subunit beta; AltName: Full=PH-30; Short=PH30; AltName: Full=PH30-beta; Flags: Precursor;
FUNCTION: Sperm surface membrane protein that may be involved in sperm-egg plasma membrane adhesion and fusion during fertilization. Could have a direct role in sperm-zona binding or migration of sperm from the uterus into the oviduct. Interactions with egg membrane could be mediated via binding between its disintegrin-like domain to one or more integrins receptors on the egg. This is a non catalytic metalloprotease-like protein.
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Expressed specifically in spermatogenic cells in the seminiferous cells. Not detected in fetal tissues.
DOMAIN: A tripeptide motif (FEE) within disintegrin-like domain could be involved in the binding to egg integrin receptor and thus could mediate sperm/egg binding.
PTM: The prodomain and the metalloprotease domain are cleaved during the epididymal maturation of the spermatozoa.
MISCELLANEOUS: In mammals, exists as a heterodimer composed of an alpha and beta subunits. In human, fertilin subunit alpha is a pseudogene.
SIMILARITY: Contains 1 disintegrin domain.
SIMILARITY: Contains 1 EGF-like domain.
SIMILARITY: Contains 1 peptidase M12B domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 24.34 RPKM in Testis
Total median expression: 24.37 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -6.0042-0.143 Picture PostScript Text
3' UTR -69.80360-0.194 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006586 - ADAM_Cys-rich
IPR001762 - Blood-coag_inhib_Disintegrin
IPR018358 - Disintegrin_CS
IPR024079 - MetalloPept_cat_dom
IPR001590 - Peptidase_M12B
IPR002870 - Peptidase_M12B_N

Pfam Domains:
PF00200 - Disintegrin
PF01421 - Reprolysin (M12B) family zinc metalloprotease
PF01562 - Reprolysin family propeptide
PF08516 - ADAM cysteine-rich

SCOP Domains:
55486 - Metalloproteases ("zincins"), catalytic domain
57552 - Blood coagulation inhibitor (disintegrin)

ModBase Predicted Comparative 3D Structure on Q99965
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004222 metalloendopeptidase activity
GO:0005178 integrin binding
GO:0008237 metallopeptidase activity

Biological Process:
GO:0006508 proteolysis
GO:0007155 cell adhesion
GO:0007338 single fertilization
GO:0007339 binding of sperm to zona pellucida
GO:0007342 fusion of sperm to egg plasma membrane
GO:0008542 visual learning
GO:0010628 positive regulation of gene expression
GO:0030534 adult behavior

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  KJ901435 - Synthetic construct Homo sapiens clone ccsbBroadEn_10829 ADAM2 gene, encodes complete protein.
KJ901434 - Synthetic construct Homo sapiens clone ccsbBroadEn_10828 ADAM2 gene, encodes complete protein.
BC034957 - Homo sapiens ADAM metallopeptidase domain 2, mRNA (cDNA clone MGC:26432 IMAGE:4826530), complete cds.
BC064547 - Homo sapiens ADAM metallopeptidase domain 2, mRNA (cDNA clone MGC:74935 IMAGE:5744846), complete cds.
U38805 - Homo sapiens fertilin beta mRNA, complete cds.
U52370 - Human fertilin beta mRNA, complete cds.
JD225657 - Sequence 206681 from Patent EP1572962.
JD101171 - Sequence 82195 from Patent EP1572962.
X99374 - H.sapiens mRNA for fertilin beta.
JD245697 - Sequence 226721 from Patent EP1572962.
AK301734 - Homo sapiens cDNA FLJ60930 complete cds, highly similar to ADAM 2 precursor (A disintegrin and metalloproteinase domain 2).
JD219371 - Sequence 200395 from Patent EP1572962.
AJ133005 - Homo sapiens mRNA for fertilin beta sperm protein.
JD304085 - Sequence 285109 from Patent EP1572962.
DQ891615 - Synthetic construct clone IMAGE:100004245; FLH178654.01X; RZPDo839F07128D ADAM metallopeptidase domain 2 (fertilin beta) (ADAM2) gene, encodes complete protein.
DQ894807 - Synthetic construct Homo sapiens clone IMAGE:100009267; FLH178650.01L; RZPDo839F07127D ADAM metallopeptidase domain 2 (fertilin beta) (ADAM2) gene, encodes complete protein.
CU687896 - Synthetic construct Homo sapiens gateway clone IMAGE:100021776 5' read ADAM2 mRNA.
CU689996 - Synthetic construct Homo sapiens gateway clone IMAGE:100020430 5' read ADAM2 mRNA.
JD503558 - Sequence 484582 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q99965 (Reactome details) participates in the following event(s):

R-HSA-1297338 Association of ADAM and B4GALT1 With ZP3
R-HSA-1300644 Interaction With The Zona Pellucida
R-HSA-1187000 Fertilization
R-HSA-1474165 Reproduction

-  Other Names for This Gene
  Alternate Gene Symbols: ADAM2_HUMAN, ENST00000265708.1, ENST00000265708.2, ENST00000265708.3, ENST00000265708.4, ENST00000265708.5, ENST00000265708.6, ENST00000265708.7, ENST00000265708.8, FTNB, NM_001464, P78326, Q99965, Q9UQQ8, uc317idj.1, uc317idj.2
UCSC ID: ENST00000265708.9_8
RefSeq Accession: NM_001464.5
Protein: Q99965 (aka ADAM2_HUMAN or AD02_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.