Human Gene ADAM22 (ENST00000413139.2_6) from GENCODE V47lift37
  Description: ADAM metallopeptidase domain 22, transcript variant 8 (from RefSeq NM_001324419.2)
Gencode Transcript: ENST00000413139.2_6
Gencode Gene: ENSG00000008277.15_13
Transcript (Including UTRs)
   Position: hg19 chr7:87,563,566-87,832,204 Size: 268,639 Total Exon Count: 32 Strand: +
Coding Region
   Position: hg19 chr7:87,563,781-87,825,806 Size: 262,026 Coding Exon Count: 32 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:87,563,566-87,832,204)mRNA (may differ from genome)Protein (964 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: H7C3I4_HUMAN
DESCRIPTION: SubName: Full=Disintegrin and metalloproteinase domain-containing protein 22; Flags: Fragment;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ADAM22
Diseases sorted by gene-association score: epilepsy, familial temporal lobe, 1 (12), limbic encephalitis (9)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 34.86 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 159.23 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -111.00215-0.516 Picture PostScript Text
3' UTR -1664.596398-0.260 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF00200 - Disintegrin
PF01421 - Reprolysin (M12B) family zinc metalloprotease
PF01562 - Reprolysin family propeptide
PF07974 - EGF-like domain
PF08516 - ADAM cysteine-rich
PF13582 - Metallo-peptidase family M12B Reprolysin-like

SCOP Domains:
55486 - Metalloproteases ("zincins"), catalytic domain
57552 - Blood coagulation inhibitor (disintegrin)
57196 - EGF/Laminin

ModBase Predicted Comparative 3D Structure on H7C3I4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC036029 - Homo sapiens ADAM metallopeptidase domain 22, mRNA (cDNA clone IMAGE:5278621), complete cds.
BC092465 - Homo sapiens ADAM metallopeptidase domain 22, mRNA (cDNA clone IMAGE:4375012), complete cds.
AK291010 - Homo sapiens cDNA FLJ77109 complete cds, highly similar to Homo sapiens MDC2 mRNA.
BC062433 - Homo sapiens ADAM metallopeptidase domain 22, mRNA (cDNA clone IMAGE:6458074), partial cds.
AB009671 - Homo sapiens mRNA for MDC2 alpha, MDC2 beta, complete cds.
BC125118 - Homo sapiens ADAM metallopeptidase domain 22, mRNA (cDNA clone MGC:149832 IMAGE:40118904), complete cds.
BC125117 - Homo sapiens cDNA clone IMAGE:40118903, containing frame-shift errors.
AF155381 - Homo sapiens metalloprotease-like, disintegrin-like, cysteine-rich protein 2 delta (ADAM22) mRNA, alternative splice product, complete cds.
AF155382 - Homo sapiens metalloprotease-like, disintegrin-like, cysteine-rich protein 2 epsilon (ADAM22) mRNA, complete cds.
AF073291 - Homo sapiens MDC2 (MDC2) mRNA, complete cds.
KJ906189 - Synthetic construct Homo sapiens clone ccsbBroadEn_15859 ADAM22 gene, encodes complete protein.
AK125432 - Homo sapiens cDNA FLJ43443 fis, clone OCBBF2031167, highly similar to ADAM 22 precursor (A disintegrin and metalloproteinase domain 22).
AF158637 - Homo sapiens metalloproteinase-disintegrin ADAM22-3 (ADAM22) mRNA, alternatively spliced, partial cds.
JD506800 - Sequence 487824 from Patent EP1572962.
JD378509 - Sequence 359533 from Patent EP1572962.
JD355007 - Sequence 336031 from Patent EP1572962.
JD539470 - Sequence 520494 from Patent EP1572962.
JD527333 - Sequence 508357 from Patent EP1572962.
JD279461 - Sequence 260485 from Patent EP1572962.
JD087827 - Sequence 68851 from Patent EP1572962.
JD146739 - Sequence 127763 from Patent EP1572962.
JD252702 - Sequence 233726 from Patent EP1572962.
AL133090 - Homo sapiens mRNA; cDNA DKFZp434E0528 (from clone DKFZp434E0528).

-  Other Names for This Gene
  Alternate Gene Symbols: ADAM22 , ENST00000413139.1, H7C3I4, H7C3I4_HUMAN, NM_001324419, uc319jbs.1, uc319jbs.2
UCSC ID: ENST00000413139.2_6
RefSeq Accession: NM_001324418.2
Protein: H7C3I4

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.