Human Gene ADAMTS16 (ENST00000274181.7_4) from GENCODE V47lift37
  Description: ADAM metallopeptidase with thrombospondin type 1 motif 16, transcript variant 2 (from RefSeq NR_136935.2)
Gencode Transcript: ENST00000274181.7_4
Gencode Gene: ENSG00000145536.15_5
Transcript (Including UTRs)
   Position: hg19 chr5:5,140,443-5,320,417 Size: 179,975 Total Exon Count: 23 Strand: +
Coding Region
   Position: hg19 chr5:5,140,581-5,319,251 Size: 178,671 Coding Exon Count: 23 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:5,140,443-5,320,417)mRNA (may differ from genome)Protein (1224 aa)
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UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ATS16_HUMAN
DESCRIPTION: RecName: Full=A disintegrin and metalloproteinase with thrombospondin motifs 16; Short=ADAM-TS 16; Short=ADAM-TS16; Short=ADAMTS-16; EC=3.4.24.-; Flags: Precursor;
COFACTOR: Binds 1 zinc ion per subunit (By similarity).
SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix (By similarity).
TISSUE SPECIFICITY: Expressed in fetal lung and kidney and in adult prostate and ovary.
DOMAIN: The spacer domain and the TSP type-1 domains are important for a tight interaction with the extracellular matrix (By similarity).
DOMAIN: The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.
PTM: The precursor is cleaved by a furin endopeptidase (By similarity).
SIMILARITY: Contains 1 disintegrin domain.
SIMILARITY: Contains 1 peptidase M12B domain.
SIMILARITY: Contains 1 PLAC domain.
SIMILARITY: Contains 6 TSP type-1 domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ADAMTS16
Diseases sorted by gene-association score: peters-plus syndrome (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.01 RPKM in Brain - Cerebellum
Total median expression: 25.76 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -71.50138-0.518 Picture PostScript Text
3' UTR -384.801166-0.330 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR010294 - ADAM_spacer1
IPR024079 - MetalloPept_cat_dom
IPR001590 - Peptidase_M12B
IPR013273 - Peptidase_M12B_ADAM-TS
IPR002870 - Peptidase_M12B_N
IPR010909 - PLAC
IPR000884 - Thrombospondin_1_rpt

Pfam Domains:
PF00090 - Thrombospondin type 1 domain
PF01421 - Reprolysin (M12B) family zinc metalloprotease
PF01562 - Reprolysin family propeptide
PF05986 - ADAM-TS Spacer 1
PF08686 - PLAC (protease and lacunin) domain
PF13574 - Metallo-peptidase family M12B Reprolysin-like
PF13582 - Metallo-peptidase family M12B Reprolysin-like
PF13688 - Metallo-peptidase family M12
PF17771 - ADAM cysteine-rich domain
PF19030 - Thrombospondin type 1 domain
PF19236 - ADAM cysteine-rich domain

SCOP Domains:
55486 - Metalloproteases ("zincins"), catalytic domain
82895 - TSP-1 type 1 repeat

ModBase Predicted Comparative 3D Structure on Q8TE57
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004222 metalloendopeptidase activity
GO:0008233 peptidase activity
GO:0008237 metallopeptidase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0001658 branching involved in ureteric bud morphogenesis
GO:0003073 regulation of systemic arterial blood pressure
GO:0006508 proteolysis
GO:0048232 male gamete generation
GO:1902017 regulation of cilium assembly

Cellular Component:
GO:0005576 extracellular region


-  Descriptions from all associated GenBank mRNAs
  AK127746 - Homo sapiens cDNA FLJ45846 fis, clone OCBBF2007039, highly similar to ADAMTS-16 precursor (EC 3.4.24.-).
AJ315734 - Homo sapiens mRNA for metalloprotease disintegrin 16 (ADAMTS16 gene).
AB462933 - Synthetic construct DNA, clone: pF1KB7299, Homo sapiens ADAMTS16 gene for ADAM metallopeptidase with thrombospondin type 1 motif, 16, without stop codon, in Flexi system.
BC140297 - Synthetic construct Homo sapiens clone IMAGE:100014303, MGC:173246 ADAM metallopeptidase with thrombospondin type 1 motif, 16 (ADAMTS16) mRNA, encodes complete protein.
AB095949 - Homo sapiens mRNA for KIAA2029 protein.
DQ266047 - Homo sapiens ADAMTS16s alternative splice form mRNA, complete cds.
AK122980 - Homo sapiens cDNA FLJ16731 fis, clone BNGH42000994, highly similar to ADAMTS-16 precursor (EC 3.4.24.-).
AM983533 - Homo sapiens partial mRNA for ADAM metallopeptidase with thrombospondin type 1 motif, 16 (ADAMTS16 gene), isolated from fetal kidney.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8TE57 (Reactome details) participates in the following event(s):

R-HSA-5173192 POFUT2 transfers fucose to TSR domain-containing proteins
R-HSA-5173005 B3GALTL transfers glucose to O-fucosyl-proteins
R-HSA-1592310 Aggrecan degradation by ADAMTSs
R-NUL-2533988 Aggrecan degradation by ADAMTS4,ADAMTS5
R-HSA-5173214 O-glycosylation of TSR domain-containing proteins
R-HSA-5083635 Defective B3GALTL causes Peters-plus syndrome (PpS)
R-HSA-1474228 Degradation of the extracellular matrix
R-HSA-5173105 O-linked glycosylation
R-HSA-3906995 Diseases associated with O-glycosylation of proteins
R-HSA-1474244 Extracellular matrix organization
R-HSA-597592 Post-translational protein modification
R-HSA-3781865 Diseases of glycosylation
R-HSA-392499 Metabolism of proteins
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: ATS16_HUMAN, C6G490, ENST00000274181.1, ENST00000274181.2, ENST00000274181.3, ENST00000274181.4, ENST00000274181.5, ENST00000274181.6, KIAA2029, NR_136935, Q8IVE2, Q8TE57, uc317jee.1, uc317jee.2
UCSC ID: ENST00000274181.7_4
RefSeq Accession: NM_139056.4
Protein: Q8TE57 (aka ATS16_HUMAN or AT16_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.