Human Gene ADCY6 (ENST00000357869.8_9) from GENCODE V47lift37
  Description: adenylate cyclase 6, transcript variant 1 (from RefSeq NM_015270.5)
Gencode Transcript: ENST00000357869.8_9
Gencode Gene: ENSG00000174233.12_12
Transcript (Including UTRs)
   Position: hg19 chr12:49,159,977-49,182,872 Size: 22,896 Total Exon Count: 22 Strand: -
Coding Region
   Position: hg19 chr12:49,162,374-49,177,217 Size: 14,844 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:49,159,977-49,182,872)mRNA (may differ from genome)Protein (1168 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ADCY6_HUMAN
DESCRIPTION: RecName: Full=Adenylate cyclase type 6; EC=4.6.1.1; AltName: Full=ATP pyrophosphate-lyase 6; AltName: Full=Adenylate cyclase type VI; AltName: Full=Adenylyl cyclase 6; AltName: Full=Ca(2+)-inhibitable adenylyl cyclase;
FUNCTION: Membrane-bound, calcium-inhibitable adenylyl cyclase (By similarity).
CATALYTIC ACTIVITY: ATP = 3',5'-cyclic AMP + diphosphate.
COFACTOR: Binds 2 magnesium ions per subunit (By similarity).
ENZYME REGULATION: Inhibition by calcium in the submicromolar concentration range (By similarity). Phosphorylation by RAF1 results in its activation.
SUBUNIT: Part of a complex containing AKAP5, ADCY5, PDE4C and PKD2 (By similarity). Interacts with RAF1.
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein. Cell projection, cilium (By similarity).
PTM: Phosphorylated by RAF1.
SIMILARITY: Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
SIMILARITY: Contains 2 guanylate cyclase domains.
SEQUENCE CAUTION: Sequence=BAA24852.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ADCY6
Diseases sorted by gene-association score: lethal congenital contracture syndrome 8* (1279), hypomyelination neuropathy-arthrogryposis syndrome* (247), granulomatous amebic encephalitis (11)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 34.36 RPKM in Heart - Left Ventricle
Total median expression: 800.22 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -102.40188-0.545 Picture PostScript Text
3' UTR -993.602397-0.415 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001054 - A/G_cyclase
IPR018297 - A/G_cyclase_CS
IPR009398 - Adenylate_cyclase-like

Pfam Domains:
PF00211 - Adenylate and Guanylate cyclase catalytic domain
PF06327 - Domain of Unknown Function (DUF1053)
PF16214 - Adenylyl cyclase N-terminal extracellular and transmembrane region

SCOP Domains:
55073 - Nucleotide cyclase
81665 - Calcium ATPase, transmembrane domain M

ModBase Predicted Comparative 3D Structure on O43306
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004016 adenylate cyclase activity
GO:0004383 guanylate cyclase activity
GO:0005080 protein kinase C binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016829 lyase activity
GO:0016849 phosphorus-oxygen lyase activity
GO:0019901 protein kinase binding
GO:0046872 metal ion binding

Biological Process:
GO:0003091 renal water homeostasis
GO:0006171 cAMP biosynthetic process
GO:0006182 cGMP biosynthetic process
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007189 adenylate cyclase-activating G-protein coupled receptor signaling pathway
GO:0007193 adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway
GO:0007212 dopamine receptor signaling pathway
GO:0009190 cyclic nucleotide biosynthetic process
GO:0010977 negative regulation of neuron projection development
GO:0035556 intracellular signal transduction
GO:0035811 negative regulation of urine volume
GO:0071377 cellular response to glucagon stimulus
GO:0071380 cellular response to prostaglandin E stimulus
GO:0071870 cellular response to catecholamine stimulus
GO:0097746 regulation of blood vessel diameter
GO:1904117 cellular response to vasopressin
GO:1904322 cellular response to forskolin

Cellular Component:
GO:0005886 plasma membrane
GO:0005929 cilium
GO:0008074 guanylate cyclase complex, soluble
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031226 intrinsic component of plasma membrane
GO:0042995 cell projection


-  Descriptions from all associated GenBank mRNAs
  BX537664 - Homo sapiens mRNA; cDNA DKFZp779F075 (from clone DKFZp779F075).
BC064923 - Homo sapiens adenylate cyclase 6, mRNA (cDNA clone IMAGE:6141275).
AB007882 - Homo sapiens KIAA0422 mRNA.
JD206095 - Sequence 187119 from Patent EP1572962.
JD065666 - Sequence 46690 from Patent EP1572962.
JD054148 - Sequence 35172 from Patent EP1572962.
AF250226 - Homo sapiens adenylyl cyclase type VI mRNA, complete cds.
JD223070 - Sequence 204094 from Patent EP1572962.
JD369194 - Sequence 350218 from Patent EP1572962.
JD182743 - Sequence 163767 from Patent EP1572962.
JD219339 - Sequence 200363 from Patent EP1572962.
JD329997 - Sequence 311021 from Patent EP1572962.
JD328171 - Sequence 309195 from Patent EP1572962.
JD460279 - Sequence 441303 from Patent EP1572962.
JD453996 - Sequence 435020 from Patent EP1572962.
JD559837 - Sequence 540861 from Patent EP1572962.
JD548620 - Sequence 529644 from Patent EP1572962.
JD166859 - Sequence 147883 from Patent EP1572962.
JD054968 - Sequence 35992 from Patent EP1572962.
JD299402 - Sequence 280426 from Patent EP1572962.
JD182019 - Sequence 163043 from Patent EP1572962.
JD119439 - Sequence 100463 from Patent EP1572962.
JD124041 - Sequence 105065 from Patent EP1572962.
JD233264 - Sequence 214288 from Patent EP1572962.
JD442216 - Sequence 423240 from Patent EP1572962.
JD384836 - Sequence 365860 from Patent EP1572962.
JD255296 - Sequence 236320 from Patent EP1572962.
JD566334 - Sequence 547358 from Patent EP1572962.
JD157464 - Sequence 138488 from Patent EP1572962.
JD483562 - Sequence 464586 from Patent EP1572962.
JD182798 - Sequence 163822 from Patent EP1572962.
JD142193 - Sequence 123217 from Patent EP1572962.
JD076968 - Sequence 57992 from Patent EP1572962.
JD515510 - Sequence 496534 from Patent EP1572962.
JD551856 - Sequence 532880 from Patent EP1572962.
JD438181 - Sequence 419205 from Patent EP1572962.
JD178461 - Sequence 159485 from Patent EP1572962.
JD368754 - Sequence 349778 from Patent EP1572962.
JD089020 - Sequence 70044 from Patent EP1572962.
JD115795 - Sequence 96819 from Patent EP1572962.
JD195690 - Sequence 176714 from Patent EP1572962.
JD431743 - Sequence 412767 from Patent EP1572962.
JD263215 - Sequence 244239 from Patent EP1572962.
JD431590 - Sequence 412614 from Patent EP1572962.
JD225104 - Sequence 206128 from Patent EP1572962.
JD215837 - Sequence 196861 from Patent EP1572962.
JD251151 - Sequence 232175 from Patent EP1572962.
JD549791 - Sequence 530815 from Patent EP1572962.
JD357265 - Sequence 338289 from Patent EP1572962.
JD202535 - Sequence 183559 from Patent EP1572962.
JD257565 - Sequence 238589 from Patent EP1572962.
JD114586 - Sequence 95610 from Patent EP1572962.
JD532435 - Sequence 513459 from Patent EP1572962.
JD069653 - Sequence 50677 from Patent EP1572962.
JD485468 - Sequence 466492 from Patent EP1572962.
JD060797 - Sequence 41821 from Patent EP1572962.
JD231042 - Sequence 212066 from Patent EP1572962.
JD282315 - Sequence 263339 from Patent EP1572962.
JD091883 - Sequence 72907 from Patent EP1572962.
AB383879 - Synthetic construct DNA, clone: pF1KSDA0422, Homo sapiens ADCY6 gene for adenylate cyclase type 6, complete cds, without stop codon, in Flexi system.
AK294446 - Homo sapiens cDNA FLJ57105 complete cds, highly similar to Adenylate cyclase type 6 (EC 4.6.1.1).
U65474 - Homo sapiens adenylyl cyclase type VI mRNA, partial cds.
AK225224 - Homo sapiens mRNA for adenylate cyclase 6 isoform b variant, clone: COL06070.
JD195847 - Sequence 176871 from Patent EP1572962.
LQ980384 - Sequence 30 from Patent WO2013050532.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O43306 (Reactome details) participates in the following event(s):

R-HSA-400097 G-beta:G-gamma inhibits Adenylate cyclase
R-HSA-381704 G(s):GTP activates Adenylyl cyclase
R-HSA-163617 G alpha (s) activates adenylate cyclase
R-HSA-170672 Galpha-olf:GTP binds to adenylate cyclase and activates it
R-HSA-392064 G alpha (z) inhibits adenylate cyclase
R-HSA-392206 G alpha (i) inhibits adenylate cyclase
R-HSA-170674 Dissociation of the Gi alpha:G olf complex
R-HSA-170677 The G alpha-olf:GDP:Adenylate cyclase complex dissociates
R-HSA-170685 Adenylaye cyclase increases the GTPase activity of G alpha-olf
R-HSA-170686 Adenylate cyclase increases the GTPase activity of Gi alpha
R-HSA-170671 G alpha-olf:GTP binds to Gi alpha1:GTP:adenylate cyclase complex
R-HSA-111930 Adenylate cyclase produces cAMP
R-HSA-392129 Adenylate cyclase converts ATP to 3',5'-cyclic AMP (cAMP) and pyrophosphate
R-HSA-381607 Activated Adenylyl cyclase synthesizes cyclic AMP
R-HSA-5610727 GPR161 promotes cAMP production in a G alpha(s)-dependent manner
R-HSA-164377 Activated Adenylate cyclase catalyses cAMP synthesis
R-HSA-170676 Adenylate cyclase converts ATP into cyclic AMP
R-HSA-170666 Adenylate cyclase increases the GTPase activity of G alpha-olf
R-HSA-400042 Adrenaline,noradrenaline inhibits insulin secretion
R-HSA-163359 Glucagon signaling in metabolic regulation
R-HSA-381676 Glucagon-like Peptide-1 (GLP1) regulates insulin secretion
R-HSA-418555 G alpha (s) signalling events
R-HSA-432040 Vasopressin regulates renal water homeostasis via Aquaporins
R-HSA-170660 Adenylate cyclase activating pathway
R-HSA-418597 G alpha (z) signalling events
R-HSA-170670 Adenylate cyclase inhibitory pathway
R-HSA-418594 G alpha (i) signalling events
R-HSA-422356 Regulation of insulin secretion
R-HSA-163685 Energy Metabolism
R-HSA-388396 GPCR downstream signalling
R-HSA-445717 Aquaporin-mediated transport
R-HSA-112040 G-protein mediated events
R-HSA-997269 Inhibition of adenylate cyclase pathway
R-HSA-163615 PKA activation
R-HSA-1430728 Metabolism
R-HSA-5610787 Hedgehog 'off' state
R-HSA-164378 PKA activation in glucagon signalling
R-HSA-372790 Signaling by GPCR
R-HSA-382551 Transport of small molecules
R-HSA-111885 Opioid Signalling
R-HSA-991365 Activation of GABAB receptors
R-HSA-111931 PKA-mediated phosphorylation of CREB
R-HSA-5358351 Signaling by Hedgehog
R-HSA-162582 Signal Transduction
R-HSA-977444 GABA B receptor activation
R-HSA-111933 Calmodulin induced events
R-HSA-977443 GABA receptor activation
R-HSA-111997 CaM pathway
R-HSA-112314 Neurotransmitter receptors and postsynaptic signal transmission
R-HSA-111996 Ca-dependent events
R-HSA-1489509 DAG and IP3 signaling
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-112043 PLC beta mediated events
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-112316 Neuronal System

-  Other Names for This Gene
  Alternate Gene Symbols: ADCY6_HUMAN, ENST00000357869.1, ENST00000357869.2, ENST00000357869.3, ENST00000357869.4, ENST00000357869.5, ENST00000357869.6, ENST00000357869.7, KIAA0422, NM_015270, O43306, Q9NR75, Q9UDB0, uc318agn.1, uc318agn.2
UCSC ID: ENST00000357869.8_9
RefSeq Accession: NM_015270.5
Protein: O43306 (aka ADCY6_HUMAN or CYA6_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.