Human Gene AJUBA (ENST00000262713.7_7) from GENCODE V47lift37
  Description: ajuba LIM protein, transcript variant 1 (from RefSeq NM_032876.6)
Gencode Transcript: ENST00000262713.7_7
Gencode Gene: ENSG00000129474.17_12
Transcript (Including UTRs)
   Position: hg19 chr14:23,440,386-23,451,760 Size: 11,375 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr14:23,442,652-23,451,475 Size: 8,824 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:23,440,386-23,451,760)mRNA (may differ from genome)Protein (538 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AJUBA_HUMAN
DESCRIPTION: RecName: Full=LIM domain-containing protein ajuba;
FUNCTION: Adapter or scaffold protein which participates in the assembly of numerous protein complexes and is involved in several cellular processes such as cell fate determination, cytoskeletal organization, repression of gene transcription, mitosis, cell-cell adhesion, cell differentiation, proliferation and migration. Contributes to the linking and/or strengthening of epithelia cell- cell junctions in part by linking adhesive receptors to the actin cytoskeleton. May be involved in signal transduction from cell adhesion sites to the nucleus. Plays an important role in regulation of the kinase activity of AURKA for mitotic commitment. Also a component of the IL-1 signaling pathway modulating IL-1- induced NFKB1 activation by influencing the assembly and activity of the PRKCZ-SQSTM1-TRAF6 multiprotein signaling complex. Functions as an HDAC-dependent corepressor for a subset of GFI1 target genes. Acts as a transcriptional corepressor for SNAI1 and SNAI2/SLUG-dependent repression of E-cadherin transcription. Acts as a hypoxic regulator by bridging an association between the prolyl hydroxylases and VHL enabling efficient degradation of HIF1A. Positively regulates microRNA (miRNA)-mediated gene silencing. Negatively regulates the Hippo signaling pathway and antagonizes phosphorylation of YAP1.
SUBUNIT: Interacts with GRB2, PIP5K1B and SLC1A2 (By similarity). Interacts with AURKA; the interaction occurs during mitosis and both proteins are phosphorylated as they form a complex. Interacts with CTNNA1 and with F-actin. Interacts with LATS2; the interaction occurs during mitosis and the complex regulates organization of the spindle apparatus through recruitment of TUBG to the centrosome. Forms a complex with SQSTM1, PRKCZ and TRAF6. Component of the GFI1-AJUBA-HDAC1 repressor complex. Interacts directly (via the LIM domains) with GFI1; the interaction results in the HDAC-dependent corepression of a subset of GFI1 target genes, and is independent of the GFI1 SNAG domain. Interacts with HDAC1, HDAC2 and HDAC3. Interacts with SNAI2/SLUG (via SNAG domain) and SCRT1 (via SNAG domain) (By similarity). Interacts with EIF4E, EIF2C1, EIF2C2, DCP2, DDX6, LATS1, LATS2, SAV1, EGLN2/PHD1 and EGLN3/PHD3. Interacts (via LIM domains) with isoform 1 and isoform 3 of VHL. Interacts (via LIM domains) with SNAI1 (via SNAG domain).
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton. Cell membrane. Cell junction. Nucleus. Cytoplasm, cytoskeleton, centrosome. Cytoplasm, P-body. Note=Shuttles between the cytoplasm and the nucleus. Localizes on centrosomes during G2-M phase. Preferentially co- localizes with cadherin-adhesive complexes at sites of cell-cell contacts. Colocalizes with GFI1 in the nucleus.
DOMAIN: LIM region interacts with CTNNA1. The preLIM region binds directly actin filaments.
DOMAIN: LIM-2 and LIM-3 domains mediate the interaction with the N-terminal region of AURKA. The association between LATS2 and AJUBA required the second LIM domain of AJUBA.
PTM: Phosphorylated by LATS2 during mitosis. Phosphorylated by AURKA.
MISCELLANEOUS: 'Ajuba' means 'curiosity' in Urdu, an Indian dialect.
SIMILARITY: Belongs to the zyxin/ajuba family.
SIMILARITY: Contains 3 LIM zinc-binding domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 12.54 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 155.25 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -144.50285-0.507 Picture PostScript Text
3' UTR -753.202266-0.332 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001781 - Znf_LIM

Pfam Domains:
PF00412 - LIM domain

SCOP Domains:
57716 - Glucocorticoid receptor-like (DNA-binding domain)

ModBase Predicted Comparative 3D Structure on Q96IF1
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003682 chromatin binding
GO:0003714 transcription corepressor activity
GO:0005515 protein binding
GO:0045294 alpha-catenin binding
GO:0046872 metal ion binding
GO:0051015 actin filament binding

Biological Process:
GO:0000086 G2/M transition of mitotic cell cycle
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001666 response to hypoxia
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007010 cytoskeleton organization
GO:0007049 cell cycle
GO:0007155 cell adhesion
GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0030032 lamellipodium assembly
GO:0030334 regulation of cell migration
GO:0031047 gene silencing by RNA
GO:0031328 positive regulation of cellular biosynthetic process
GO:0031334 positive regulation of protein complex assembly
GO:0033673 negative regulation of kinase activity
GO:0033674 positive regulation of kinase activity
GO:0034613 cellular protein localization
GO:0035195 gene silencing by miRNA
GO:0035313 wound healing, spreading of epidermal cells
GO:0035331 negative regulation of hippo signaling
GO:0043087 regulation of GTPase activity
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043406 positive regulation of MAP kinase activity
GO:0046474 glycerophospholipid biosynthetic process
GO:0048041 focal adhesion assembly
GO:1900037 regulation of cellular response to hypoxia
GO:2000637 positive regulation of gene silencing by miRNA

Cellular Component:
GO:0000932 P-body
GO:0005634 nucleus
GO:0005667 transcription factor complex
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0005911 cell-cell junction
GO:0005912 adherens junction
GO:0005925 focal adhesion
GO:0016020 membrane
GO:0030027 lamellipodium
GO:0030054 cell junction


-  Descriptions from all associated GenBank mRNAs
  AY927599 - Homo sapiens mRNA sequence.
AK025567 - Homo sapiens cDNA: FLJ21914 fis, clone HEP03892.
BC016733 - Homo sapiens, clone IMAGE:4096523, mRNA.
LF210073 - JP 2014500723-A/17576: Polycomb-Associated Non-Coding RNAs.
BC007580 - Homo sapiens jub, ajuba homolog (Xenopus laevis), mRNA (cDNA clone MGC:15563 IMAGE:3139903), complete cds.
AK096128 - Homo sapiens cDNA FLJ38809 fis, clone LIVER2006006, highly similar to Homo sapiens jub, ajuba homolog (Xenopus laevis) (JUB), transcript variant 2, mRNA.
AY169959 - Homo sapiens ajuba (JUB) mRNA, complete cds.
BC034968 - Homo sapiens jub, ajuba homolog (Xenopus laevis), mRNA (cDNA clone MGC:26777 IMAGE:4837383), complete cds.
JD274014 - Sequence 255038 from Patent EP1572962.
JD042151 - Sequence 23175 from Patent EP1572962.
JD146445 - Sequence 127469 from Patent EP1572962.
JD130885 - Sequence 111909 from Patent EP1572962.
JD347405 - Sequence 328429 from Patent EP1572962.
JD115310 - Sequence 96334 from Patent EP1572962.
JD531992 - Sequence 513016 from Patent EP1572962.
JD164465 - Sequence 145489 from Patent EP1572962.
JD294701 - Sequence 275725 from Patent EP1572962.
JD504021 - Sequence 485045 from Patent EP1572962.
JD158432 - Sequence 139456 from Patent EP1572962.
JD227246 - Sequence 208270 from Patent EP1572962.
JD241922 - Sequence 222946 from Patent EP1572962.
JD334558 - Sequence 315582 from Patent EP1572962.
JD357139 - Sequence 338163 from Patent EP1572962.
JD346715 - Sequence 327739 from Patent EP1572962.
JD255871 - Sequence 236895 from Patent EP1572962.
JD308306 - Sequence 289330 from Patent EP1572962.
JD341532 - Sequence 322556 from Patent EP1572962.
JD064485 - Sequence 45509 from Patent EP1572962.
JD299481 - Sequence 280505 from Patent EP1572962.
JD333154 - Sequence 314178 from Patent EP1572962.
JD299044 - Sequence 280068 from Patent EP1572962.
JD333153 - Sequence 314177 from Patent EP1572962.
JD176211 - Sequence 157235 from Patent EP1572962.
JD281857 - Sequence 262881 from Patent EP1572962.
JD112884 - Sequence 93908 from Patent EP1572962.
JD223218 - Sequence 204242 from Patent EP1572962.
JD182349 - Sequence 163373 from Patent EP1572962.
JD436466 - Sequence 417490 from Patent EP1572962.
JD062312 - Sequence 43336 from Patent EP1572962.
JD360754 - Sequence 341778 from Patent EP1572962.
LF334471 - JP 2014500723-A/141974: Polycomb-Associated Non-Coding RNAs.
JD509870 - Sequence 490894 from Patent EP1572962.
JD049368 - Sequence 30392 from Patent EP1572962.
DQ893513 - Synthetic construct clone IMAGE:100006143; FLH194771.01X; RZPDo839E1180D jub, ajuba homolog (Xenopus laevis) (JUB) gene, encodes complete protein.
DQ896486 - Synthetic construct Homo sapiens clone IMAGE:100010946; FLH194767.01L; RZPDo839E1170D jub, ajuba homolog (Xenopus laevis) (JUB) gene, encodes complete protein.
AB590376 - Synthetic construct DNA, clone: pFN21AE1369, Homo sapiens JUB gene for jub, ajuba homolog, without stop codon, in Flexi system.
LF334483 - JP 2014500723-A/141986: Polycomb-Associated Non-Coding RNAs.
LF334484 - JP 2014500723-A/141987: Polycomb-Associated Non-Coding RNAs.
LF334485 - JP 2014500723-A/141988: Polycomb-Associated Non-Coding RNAs.
LF334486 - JP 2014500723-A/141989: Polycomb-Associated Non-Coding RNAs.
LF334487 - JP 2014500723-A/141990: Polycomb-Associated Non-Coding RNAs.
LF334488 - JP 2014500723-A/141991: Polycomb-Associated Non-Coding RNAs.
LF334489 - JP 2014500723-A/141992: Polycomb-Associated Non-Coding RNAs.
JD139008 - Sequence 120032 from Patent EP1572962.
LF334490 - JP 2014500723-A/141993: Polycomb-Associated Non-Coding RNAs.
JD455443 - Sequence 436467 from Patent EP1572962.
JD310206 - Sequence 291230 from Patent EP1572962.
JD183607 - Sequence 164631 from Patent EP1572962.
JD470068 - Sequence 451092 from Patent EP1572962.
JD375320 - Sequence 356344 from Patent EP1572962.
MA445650 - JP 2018138019-A/17576: Polycomb-Associated Non-Coding RNAs.
MA570048 - JP 2018138019-A/141974: Polycomb-Associated Non-Coding RNAs.
MA570060 - JP 2018138019-A/141986: Polycomb-Associated Non-Coding RNAs.
MA570061 - JP 2018138019-A/141987: Polycomb-Associated Non-Coding RNAs.
MA570062 - JP 2018138019-A/141988: Polycomb-Associated Non-Coding RNAs.
MA570063 - JP 2018138019-A/141989: Polycomb-Associated Non-Coding RNAs.
MA570064 - JP 2018138019-A/141990: Polycomb-Associated Non-Coding RNAs.
MA570065 - JP 2018138019-A/141991: Polycomb-Associated Non-Coding RNAs.
MA570066 - JP 2018138019-A/141992: Polycomb-Associated Non-Coding RNAs.
MA570067 - JP 2018138019-A/141993: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q96IF1 (Reactome details) participates in the following event(s):

R-HSA-2574845 AJUBA binds centrosome-associated AURKA
R-HSA-2574840 AJUBA facilitates AURKA autophosphorylation
R-HSA-1234183 Cytosolic VHL:EloB,C:CUL2:RBX1 binds hydroxyprolyl-HIF-alpha
R-HSA-1234163 Cytosolic VBC complex ubiquitinylates hydroxyprolyl-HIF-alpha
R-HSA-1234173 Cytosolic PHD2,3 hydroxylates proline residues on HIF3A
R-HSA-1234177 Cytosolic PHD2,3 hydroxylates proline residues on HIF1A
R-HSA-1234179 Cytosolic PHD2,3 hydroxylates proline residues on EPAS1 (HIF2A)
R-HSA-2565942 Regulation of PLK1 Activity at G2/M Transition
R-HSA-5617472 Activation of anterior HOX genes in hindbrain development during early embryogenesis
R-HSA-69275 G2/M Transition
R-HSA-5619507 Activation of HOX genes during differentiation
R-HSA-1234176 Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-1266738 Developmental Biology
R-HSA-1234174 Regulation of Hypoxia-inducible Factor (HIF) by oxygen
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-2262749 Cellular response to hypoxia
R-HSA-1640170 Cell Cycle
R-HSA-2262752 Cellular responses to stress
R-HSA-8953897 Cellular responses to external stimuli

-  Other Names for This Gene
  Alternate Gene Symbols: A8MX18, AJUBA_HUMAN, D3DS37, ENST00000262713.1, ENST00000262713.2, ENST00000262713.3, ENST00000262713.4, ENST00000262713.5, ENST00000262713.6, JUB, NM_032876, Q96IF1, uc317hct.1, uc317hct.2
UCSC ID: ENST00000262713.7_7
RefSeq Accession: NM_032876.6
Protein: Q96IF1 (aka AJUBA_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.