Human Gene ANAPC5 (ENST00000261819.8_7) from GENCODE V47lift37
  Description: anaphase promoting complex subunit 5, transcript variant 1 (from RefSeq NM_016237.5)
Gencode Transcript: ENST00000261819.8_7
Gencode Gene: ENSG00000089053.13_9
Transcript (Including UTRs)
   Position: hg19 chr12:121,746,048-121,790,214 Size: 44,167 Total Exon Count: 17 Strand: -
Coding Region
   Position: hg19 chr12:121,746,283-121,790,143 Size: 43,861 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:121,746,048-121,790,214)mRNA (may differ from genome)Protein (755 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: APC5_HUMAN
DESCRIPTION: RecName: Full=Anaphase-promoting complex subunit 5; Short=APC5; AltName: Full=Cyclosome subunit 5;
FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: The APC/C is composed of at least 12 subunits.
SIMILARITY: Belongs to the APC5 family.
SIMILARITY: Contains 4 TPR repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 43.50 RPKM in Pituitary
Total median expression: 1545.52 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -41.3071-0.582 Picture PostScript Text
3' UTR -44.00235-0.187 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026000 - Apc5_TPR
IPR011990 - TPR-like_helical

Pfam Domains:
PF12862 - Anaphase-promoting complex subunit 5

SCOP Domains:
48371 - ARM repeat
81901 - HCP-like
48452 - TPR-like

ModBase Predicted Comparative 3D Structure on Q9UJX4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0019903 protein phosphatase binding

Biological Process:
GO:0007049 cell cycle
GO:0016567 protein ubiquitination
GO:0031145 anaphase-promoting complex-dependent catabolic process
GO:0051301 cell division
GO:0070979 protein K11-linked ubiquitination

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005680 anaphase-promoting complex
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  BC045686 - Homo sapiens anaphase promoting complex subunit 5, mRNA (cDNA clone IMAGE:5301042), complete cds.
AK054779 - Homo sapiens cDNA FLJ30217 fis, clone BRACE2001709, highly similar to Anaphase-promoting complex subunit 5 (APC5)(Cyclosome subunit 5).
BC003095 - Homo sapiens cDNA clone IMAGE:3355753.
BX537687 - Homo sapiens mRNA; cDNA DKFZp686D09196 (from clone DKFZp686D09196).
BC034243 - Homo sapiens, Similar to anaphase promoting complex subunit 5, clone IMAGE:3463281, mRNA, partial cds.
BC001081 - Homo sapiens anaphase promoting complex subunit 5, mRNA (cDNA clone MGC:2750 IMAGE:2823401), complete cds.
BC001950 - Homo sapiens anaphase promoting complex subunit 5, mRNA (cDNA clone MGC:4377 IMAGE:2823401), complete cds.
BC006301 - Homo sapiens anaphase promoting complex subunit 5, mRNA (cDNA clone MGC:13295 IMAGE:4100632), complete cds.
AK025614 - Homo sapiens cDNA: FLJ21961 fis, clone HEP05554, highly similar to AF191339 Homo sapiens anaphase-promoting complex subunit 5 (APC5) mRNA.
AB019409 - Homo sapiens mRNA, expressed in fibroblasts of periodontal ligament, complete cds, clone:PDL-108.
AK301197 - Homo sapiens cDNA FLJ58697 complete cds, highly similar to Anaphase-promoting complex subunit 5 (APC5)(Cyclosome subunit 5).
AK294139 - Homo sapiens cDNA FLJ55537 complete cds, highly similar to Anaphase-promoting complex subunit 5 (APC5)(Cyclosome subunit 5).
AF191339 - Homo sapiens anaphase-promoting complex subunit 5 (APC5) mRNA, complete cds.
AK315451 - Homo sapiens cDNA, FLJ96509.
KJ893911 - Synthetic construct Homo sapiens clone ccsbBroadEn_03305 ANAPC5 gene, encodes complete protein.
KJ906169 - Synthetic construct Homo sapiens clone ccsbBroadEn_15839 ANAPC5 gene, encodes complete protein.
JD089979 - Sequence 71003 from Patent EP1572962.
JD175132 - Sequence 156156 from Patent EP1572962.
JD177883 - Sequence 158907 from Patent EP1572962.
CU674542 - Synthetic construct Homo sapiens gateway clone IMAGE:100017801 5' read ANAPC5 mRNA.
CU675341 - Synthetic construct Homo sapiens gateway clone IMAGE:100017483 5' read ANAPC5 mRNA.
JD024100 - Sequence 5124 from Patent EP1572962.
JD035377 - Sequence 16401 from Patent EP1572962.
JD378705 - Sequence 359729 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UJX4 (Reactome details) participates in the following event(s):

R-HSA-174119 Free APC/C phosphorylated by Plk1
R-HSA-174132 Free APC/C phosphorylated by Cyclin B:Cdc2
R-HSA-174139 Dissociation of phospho-Cdh1 from the APC/C complex
R-HSA-141423 Binding of the MCC complex to the APC/C complex
R-HSA-174070 Association of Cdh1 with the APC/C
R-HSA-174224 Dissociation of Cdc20 from APC/C complex
R-HSA-174057 Multiubiquitination of APC/C-associated Cdh1
R-HSA-188371 Association of Cyclin A:Cdk2 with Cdh1
R-HSA-3788708 CDKN1A (p21) prevents association of Cyclin A:Cdk2 with Cdh1
R-HSA-3788725 Cdh1:APC/C complex binds EHMT1:EHMT2
R-HSA-174171 Association of Cyclin A with the APC/C
R-HSA-174238 Activation of APC/C:Cdc20 by dissociation of Cdc20:phospho-APC/C from Cdc20:phospho-APC/C:Mad2:Bub3:BubR1
R-HSA-179410 Association of Nek2A with MCC:APC/C
R-HSA-174120 Association of Cyclin B:Cdc2 with Cdc20:APC/C complex
R-HSA-174121 Association of Securin with Cdc20:APC/C complex
R-HSA-174088 Association of cell cycle proteins with the APC/C:Cdh1 complex
R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-983147 Release of E3 from polyubiquitinated substrate
R-HSA-174079 Phosphorylation of Cdh1 by Cyclin A:Cdk2
R-HSA-3788705 CDKN1A (p21) prevents phosphorylation of Cdh1 by Cyclin A:Cdk2
R-HSA-3788724 Cdh1:APC/C ubiquitinates EHMT1 and EHMT2
R-HSA-174104 Ubiquitination of Cyclin A by APC/C:Cdc20 complex
R-HSA-179417 Multiubiquitination of Nek2A
R-HSA-174227 Ubiquitination of Cyclin B by phospho-APC/C:Cdc20 complex
R-HSA-174144 Ubiquitination of Securin by phospho-APC/C:Cdc20 complex
R-HSA-174195 Ubiquitination of cell cycle proteins targeted by the APC/C:Cdh1complex
R-HSA-69015 Cytoplasmic phosphorylated Cdc6 is ubiquitinated by the anaphase-promoting complex
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-176412 Phosphorylation of the APC/C
R-HSA-174084 Autodegradation of Cdh1 by Cdh1:APC/C
R-HSA-176408 Regulation of APC/C activators between G1/S and early anaphase
R-HSA-141430 Inactivation of APC/C via direct inhibition of the APC/C complex
R-HSA-176407 Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase
R-HSA-176814 Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins
R-HSA-2559582 Senescence-Associated Secretory Phenotype (SASP)
R-HSA-174143 APC/C-mediated degradation of cell cycle proteins
R-HSA-174184 Cdc20:Phospho-APC/C mediated degradation of Cyclin A
R-HSA-176409 APC/C:Cdc20 mediated degradation of mitotic proteins
R-HSA-179409 APC-Cdc20 mediated degradation of Nek2A
R-HSA-174048 APC/C:Cdc20 mediated degradation of Cyclin B
R-HSA-174154 APC/C:Cdc20 mediated degradation of Securin
R-HSA-2467813 Separation of Sister Chromatids
R-HSA-174178 APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1
R-HSA-141405 Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-2559583 Cellular Senescence
R-HSA-453276 Regulation of mitotic cell cycle
R-HSA-179419 APC:Cdc20 mediated degradation of cell cycle proteins prior to satisfation of the cell cycle checkpoint
R-HSA-68882 Mitotic Anaphase
R-HSA-69017 CDK-mediated phosphorylation and removal of Cdc6
R-HSA-69618 Mitotic Spindle Checkpoint
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-2262752 Cellular responses to stress
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-2555396 Mitotic Metaphase and Anaphase
R-HSA-69052 Switching of origins to a post-replicative state
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-1280218 Adaptive Immune System
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-1640170 Cell Cycle
R-HSA-68886 M Phase
R-HSA-69239 Synthesis of DNA
R-HSA-168256 Immune System
R-HSA-69242 S Phase
R-HSA-69306 DNA Replication

-  Other Names for This Gene
  Alternate Gene Symbols: APC5, APC5_HUMAN, E9PFB2, ENST00000261819.1, ENST00000261819.2, ENST00000261819.3, ENST00000261819.4, ENST00000261819.5, ENST00000261819.6, ENST00000261819.7, NM_016237, Q8N4H7, Q9BQD4, Q9UJX4, uc317gtz.1, uc317gtz.2
UCSC ID: ENST00000261819.8_7
RefSeq Accession: NM_016237.5
Protein: Q9UJX4 (aka APC5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.