Human Gene ANP32A (ENST00000465139.6_11) from GENCODE V47lift37
  Description: acidic nuclear phosphoprotein 32 family member A (from RefSeq NM_006305.4)
Gencode Transcript: ENST00000465139.6_11
Gencode Gene: ENSG00000140350.15_13
Transcript (Including UTRs)
   Position: hg19 chr15:69,070,874-69,113,234 Size: 42,361 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr15:69,072,420-69,113,090 Size: 40,671 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:69,070,874-69,113,234)mRNA (may differ from genome)Protein (249 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AN32A_HUMAN
DESCRIPTION: RecName: Full=Acidic leucine-rich nuclear phosphoprotein 32 family member A; AltName: Full=Acidic nuclear phosphoprotein pp32; AltName: Full=Leucine-rich acidic nuclear protein; Short=LANP; AltName: Full=Mapmodulin; AltName: Full=Potent heat-stable protein phosphatase 2A inhibitor I1PP2A; AltName: Full=Putative HLA-DR-associated protein I; Short=PHAPI;
FUNCTION: Implicated in a number of cellular processes, including proliferation, differentiation, caspase-dependent and caspase- independent apoptosis, suppression of transformation (tumor suppressor), inhibition of protein phosphatase 2A, regulation of mRNA trafficking and stability in association with ELAVL1, and inhibition of acetyltransferases as part of the INHAT (inhibitor of histone acetyltransferases) complex. Plays a role in E4F1- mediated transcriptional repression.
SUBUNIT: Component of the SET complex, which also contains SET, APEX1, HMGB2 and NME1. Directly interacts with SET. Interacts with ATXN1/SCA1. Interacts with MAP1B (By similarity). Interacts with ELAVL1. Part of the INHAT (inhibitor of histone acetyltransferases) complex. Interacts with E4F1.
INTERACTION: O15169:AXIN1; NbExp=2; IntAct=EBI-359234, EBI-710484;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Endoplasmic reticulum. Note=Translocates to the cytoplasm during the process of neuritogenesis (By similarity). Shuttles between nucleus and cytoplasm.
TISSUE SPECIFICITY: Expressed in all tissues tested. Highly expressed in kidney and skeletal muscle, moderate levels of expression in brain, placenta and pancreas, and weakly expressed in lung. Found in all regions of the brain examined (amygdala, caudate nucleus, corpus callosum, hippocampus and thalamus), with highest levels in amygdala.
PTM: Phosphorylated on serine residues.
PTM: The N-terminus is blocked.
PTM: Some glutamate residues are glycylated by TTLL8. This modification occurs exclusively on glutamate residues and results in a glycine chain on the gamma-carboxyl group (By similarity).
SIMILARITY: Belongs to the ANP32 family.
SIMILARITY: Contains 4 LRR (leucine-rich) repeats.
SIMILARITY: Contains 1 LRRCT domain.
SEQUENCE CAUTION: Sequence=BAD97000.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ANP32A
Diseases sorted by gene-association score: spinocerebellar ataxia 1 (13)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 36.61 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 689.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -57.50144-0.399 Picture PostScript Text
3' UTR -414.101546-0.268 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001611 - Leu-rich_rpt
IPR025875 - Leu-rich_rpt_2_copies
IPR003603 - U2A'_phosphoprotein32A_C

Pfam Domains:
PF12799 - Leucine Rich repeats (2 copies)
PF13516 - Leucine Rich repeat
PF13855 - Leucine rich repeat
PF14580 - Leucine-rich repeat

SCOP Domains:
52047 - RNI-like
52058 - L domain-like
52075 - Outer arm dynein light chain 1

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2JE0 - X-ray MuPIT 2JE1 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P39687
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0042393 histone binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006913 nucleocytoplasmic transport
GO:0035556 intracellular signal transduction
GO:0042981 regulation of apoptotic process
GO:0043488 regulation of mRNA stability
GO:0006334 nucleosome assembly
GO:0043486 histone exchange

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AY007110 - Homo sapiens clone TCCCTA00084 mRNA sequence.
AK223280 - Homo sapiens mRNA for acidic (leucine-rich) nuclear phosphoprotein 32 family, member A variant, clone: SYN03039.
BC007200 - Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member A, mRNA (cDNA clone MGC:12667 IMAGE:3677623), complete cds.
GQ900908 - Homo sapiens clone HEL-T-20 epididymis secretory sperm binding protein mRNA, complete cds.
AK127498 - Homo sapiens cDNA FLJ45591 fis, clone BRTHA3014835.
U73477 - Human acidic nuclear phosphoprotein pp32 mRNA, complete cds.
X75090 - H.sapiens mRNA for HLA-DR associated protein I (PHAPI).
AF025684 - Homo sapiens cerebellar leucine rich acidic nuclear protein (LANP) mRNA, complete cds.
AY349171 - Homo sapiens inhibitor-1 of protein phosphatase-2A mRNA, complete cds.
U60823 - Human potent heat-stable protein phosphatase 2A inhibitor I1PP2A mRNA, complete cds.
AK312703 - Homo sapiens cDNA, FLJ93102, Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32family, member A (ANP32A), mRNA.
BT007436 - Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mRNA, complete cds.
DQ893294 - Synthetic construct clone IMAGE:100005924; FLH199488.01X; RZPDo839D0882D acidic (leucine-rich) nuclear phosphoprotein 32 family, member A (ANP32A) gene, encodes complete protein.
DQ896729 - Synthetic construct Homo sapiens clone IMAGE:100011189; FLH199394.01L; RZPDo839D0881D acidic (leucine-rich) nuclear phosphoprotein 32 family, member A (ANP32A) gene, encodes complete protein.
AB463390 - Synthetic construct DNA, clone: pF1KB7264, Homo sapiens ANP32A gene for acidic (leucine-rich) nuclear phosphoprotein 32 family, member A, without stop codon, in Flexi system.
BC125143 - Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member A, mRNA (cDNA clone MGC:150373 IMAGE:40119966), complete cds.
KJ901861 - Synthetic construct Homo sapiens clone ccsbBroadEn_11255 ANP32A gene, encodes complete protein.
BC000608 - Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member A, mRNA (cDNA clone IMAGE:3346215), partial cds.
JD496590 - Sequence 477614 from Patent EP1572962.
JD266882 - Sequence 247906 from Patent EP1572962.
JD496210 - Sequence 477234 from Patent EP1572962.
BC064969 - Homo sapiens cDNA clone IMAGE:6149643, partial cds.
JD500909 - Sequence 481933 from Patent EP1572962.
JD356895 - Sequence 337919 from Patent EP1572962.
JD513179 - Sequence 494203 from Patent EP1572962.
JD026496 - Sequence 7520 from Patent EP1572962.
JD031143 - Sequence 12167 from Patent EP1572962.
LF341498 - JP 2014500723-A/149001: Polycomb-Associated Non-Coding RNAs.
JD306889 - Sequence 287913 from Patent EP1572962.
MA577075 - JP 2018138019-A/149001: Polycomb-Associated Non-Coding RNAs.
JD341260 - Sequence 322284 from Patent EP1572962.
JD138777 - Sequence 119801 from Patent EP1572962.
JD056776 - Sequence 37800 from Patent EP1572962.
JD177946 - Sequence 158970 from Patent EP1572962.
JD539272 - Sequence 520296 from Patent EP1572962.
JD178728 - Sequence 159752 from Patent EP1572962.
JD477427 - Sequence 458451 from Patent EP1572962.
JD496719 - Sequence 477743 from Patent EP1572962.
BC106719 - Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member A, mRNA (cDNA clone MGC:119787 IMAGE:40014106), complete cds.
JD260681 - Sequence 241705 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_setPathway - Granzyme A mediated Apoptosis Pathway

Reactome (by CSHL, EBI, and GO)

Protein P39687 (Reactome details) participates in the following event(s):

R-HSA-450387 HuR binds the CRM1 nuclear export machinery
R-HSA-450520 HuR (ELAVL1) binds and stabilizes mRNA
R-HSA-450531 Regulation of mRNA stability by proteins that bind AU-rich elements
R-HSA-8953854 Metabolism of RNA

-  Other Names for This Gene
  Alternate Gene Symbols: AN32A_HUMAN, B2R6T4, C15orf1, ENST00000465139.1, ENST00000465139.2, ENST00000465139.3, ENST00000465139.4, ENST00000465139.5, LANP, MAPM, NM_006305, P39687, PHAP1, Q53FK4, Q5J8L8, Q7M4N6, uc321hdu.1, uc321hdu.2
UCSC ID: ENST00000465139.6_11
RefSeq Accession: NM_006305.4
Protein: P39687 (aka AN32A_HUMAN or A32A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.