Human Gene ANP32B (ENST00000339399.5_4) from GENCODE V47lift37
  Description: acidic nuclear phosphoprotein 32 family member B (from RefSeq NM_006401.3)
Gencode Transcript: ENST00000339399.5_4
Gencode Gene: ENSG00000136938.9_7
Transcript (Including UTRs)
   Position: hg19 chr9:100,745,623-100,778,225 Size: 32,603 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr9:100,745,838-100,777,713 Size: 31,876 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:100,745,623-100,778,225)mRNA (may differ from genome)Protein (251 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AN32B_HUMAN
DESCRIPTION: RecName: Full=Acidic leucine-rich nuclear phosphoprotein 32 family member B; AltName: Full=Acidic protein rich in leucines; AltName: Full=Putative HLA-DR-associated protein I-2; Short=PHAPI2; AltName: Full=Silver-stainable protein SSP29;
FUNCTION: Multifunctional protein working as a cell cycle progression factor as well as a cell survival factor. Required for the progression from the G1 to the S phase. Anti-apoptotic protein which functions as a caspase-3 inhibitor. Has no phosphatase 2A (PP2A) inhibitor activity (By similarity). Exhibits histone chaperone properties, stimulating core histones to assemble into a nucleosome.
SUBUNIT: Monomer. Interacts with histones H3 and H4.
SUBCELLULAR LOCATION: Isoform 1: Nucleus. Note=Accumulates in the nuclei at the S phase (By similarity).
SUBCELLULAR LOCATION: Isoform 2: Cytoplasm. Note=Lacks a nuclear localization signal.
TISSUE SPECIFICITY: Expressed in heart, lung, pancreas, prostate and in spleen, thymus and placenta.
DOMAIN: Histone binding is mediated by the concave surface of the LRR region.
PTM: Some glutamate residues are glycylated by TTLL8. This modification occurs exclusively on glutamate residues and results in a glycine chain on the gamma-carboxyl group (By similarity).
SIMILARITY: Belongs to the ANP32 family.
SIMILARITY: Contains 4 LRR (leucine-rich) repeats.
SIMILARITY: Contains 1 LRRCT domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 189.57 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 3371.10 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -79.30215-0.369 Picture PostScript Text
3' UTR -108.90512-0.213 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001611 - Leu-rich_rpt
IPR003603 - U2A'_phosphoprotein32A_C

Pfam Domains:
PF00560 - Leucine Rich Repeat
PF12799 - Leucine Rich repeats (2 copies)
PF13516 - Leucine Rich repeat
PF13855 - Leucine rich repeat
PF14580 - Leucine-rich repeat

SCOP Domains:
52047 - RNI-like
52058 - L domain-like
52075 - Outer arm dynein light chain 1

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2ELL - NMR MuPIT 2RR6 - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q92688
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0042393 histone binding
GO:0070063 RNA polymerase binding

Biological Process:
GO:0001944 vasculature development
GO:0006334 nucleosome assembly
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0021591 ventricular system development
GO:0043486 histone exchange
GO:0045596 negative regulation of cell differentiation
GO:0046827 positive regulation of protein export from nucleus
GO:0048839 inner ear development
GO:0060021 palate development

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0070062 extracellular exosome
GO:0005730 nucleolus


-  Descriptions from all associated GenBank mRNAs
  AK223454 - Homo sapiens mRNA for acidic (leucine-rich) nuclear phosphoprotein 32 family, member B variant, clone: FCC114H04.
AK313733 - Homo sapiens cDNA, FLJ94333, Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32family, member B (ANP32B), mRNA.
BC072005 - Homo sapiens cDNA clone IMAGE:3356831, **** WARNING: chimeric clone ****.
LP895612 - Sequence 476 from Patent EP3253886.
U70439 - Human silver-stainable protein SSP29 mRNA, complete cds.
BC019658 - Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member B, mRNA (cDNA clone MGC:25053 IMAGE:4478860), complete cds.
Y07570 - H.sapiens mRNA for PHAPI2b protein.
Y07969 - H.sapiens mRNA for APRIL protein.
BC013003 - Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member B, mRNA (cDNA clone MGC:3861 IMAGE:3010189), complete cds.
Y07569 - H.sapiens mRNA for PHAPI2a protein.
LF319860 - JP 2014500723-A/127363: Polycomb-Associated Non-Coding RNAs.
JD488643 - Sequence 469667 from Patent EP1572962.
LF319862 - JP 2014500723-A/127365: Polycomb-Associated Non-Coding RNAs.
JD234513 - Sequence 215537 from Patent EP1572962.
JD041550 - Sequence 22574 from Patent EP1572962.
JD054484 - Sequence 35508 from Patent EP1572962.
JD123799 - Sequence 104823 from Patent EP1572962.
JD118082 - Sequence 99106 from Patent EP1572962.
JD121572 - Sequence 102596 from Patent EP1572962.
JD154198 - Sequence 135222 from Patent EP1572962.
JD273146 - Sequence 254170 from Patent EP1572962.
MA555437 - JP 2018138019-A/127363: Polycomb-Associated Non-Coding RNAs.
MA555439 - JP 2018138019-A/127365: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AN32B_HUMAN, APRIL, B2R9C7, ENST00000339399.1, ENST00000339399.2, ENST00000339399.3, ENST00000339399.4, NM_006401, O00655, P78458, P78459, PHAPI2, Q92688, uc317vih.1, uc317vih.2
UCSC ID: ENST00000339399.5_4
RefSeq Accession: NM_006401.3
Protein: Q92688 (aka AN32B_HUMAN or A32B_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
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