Human Gene ANTXR2 (ENST00000403729.7_7) from GENCODE V47lift37
  Description: ANTXR cell adhesion molecule 2, transcript variant 1 (from RefSeq NM_058172.6)
Gencode Transcript: ENST00000403729.7_7
Gencode Gene: ENSG00000163297.18_10
Transcript (Including UTRs)
   Position: hg19 chr4:80,822,300-80,994,383 Size: 172,084 Total Exon Count: 17 Strand: -
Coding Region
   Position: hg19 chr4:80,828,583-80,993,714 Size: 165,132 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:80,822,300-80,994,383)mRNA (may differ from genome)Protein (488 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ANTR2_HUMAN
DESCRIPTION: RecName: Full=Anthrax toxin receptor 2; AltName: Full=Capillary morphogenesis gene 2 protein; Short=CMG-2; Flags: Precursor;
FUNCTION: Necessary for cellular interactions with laminin and the extracellular matrix.
SUBUNIT: Binds laminin, and possibly also collagen type IV. Binds to the protective antigen (PA) of Bacillus anthracis in a divalent cation-dependent manner, with the following preference: calcium > manganese > magnesium > zinc. Binding of PA leads to heptamerization of the receptor-PA complex.
INTERACTION: P13423:pagA (xeno); NbExp=7; IntAct=EBI-456840, EBI-456868;
SUBCELLULAR LOCATION: Isoform 1: Cell membrane; Single-pass type I membrane protein. Note=Expressed at the cell surface.
SUBCELLULAR LOCATION: Isoform 2: Endoplasmic reticulum membrane; Single-pass type I membrane protein. Note=Expressed predominantly within the endoplasmic reticulum and not at the plasma membrane.
SUBCELLULAR LOCATION: Isoform 3: Secreted.
TISSUE SPECIFICITY: Expressed in prostate, thymus, ovary, testis, pancreas, colon, heart, kidney, lung, liver, peripheral blood leukocytes, placenta, skeletal muscle, small intestine and spleen.
DOMAIN: Binding to PA seems to be effected through the VWA domain.
DISEASE: Defects in ANTXR2 are the cause of infantile systemic hyalinosis (ISH) [MIM:236490]. This autosomal recessive syndrome is similar to JHF, but has an earlier onset and a more severe course. Symptoms appear at birth or within the first months of life, with painful, swollen joint contractures, osteopenia, osteoporosis and livid red hyperpigmentation over bony prominences. Patients develop multiple subcutaneous skin tumors and gingival hypertrophy. Hyaline deposits in multiple organs, recurrent infections and intractable diarrhea often lead to death within the first 2 years of life. Surviving children may suffer from severely reduced mobility due to joint contractures.
DISEASE: Defects in ANTXR2 are the cause of juvenile hyaline fibromatosis (JHF) [MIM:228600]. JHF is an autosomal recessive syndrome that is similar to ISH but takes a milder course. It is characterized by hyaline deposition in the dermis, multiple subcutaneous skin tumors and gingival hypertrophy, followed by progressive joint contractions, osteopenia and osteoporosis that may lead to a severe limitation of mobility.
MISCELLANEOUS: Upon binding of the protective antigen (PA) of Bacillus anthracis the complex moves to glycosphingolipid-rich lipid rafts, where it is internalized via a clathrin-dependent pathway.
SIMILARITY: Belongs to the ATR family.
SIMILARITY: Contains 1 VWFA domain.
SEQUENCE CAUTION: Sequence=AAY40907.1; Type=Erroneous gene model prediction; Sequence=BAB70976.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAD93150.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ANTXR2";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ANTXR2
Diseases sorted by gene-association score: hyaline fibromatosis syndrome* (1702), hyalinosis, inherited systemic* (500), fibromatosis (59), gingival hypertrophy (28), anthrax disease (20), gingival disease (18), inhalation anthrax (12), diarrhea (9), urbach-wiethe disease (8), protein-losing enteropathy (6), spondylitis (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 41.63 RPKM in Esophagus - Gastroesophageal Junction
Total median expression: 458.65 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -329.60669-0.493 Picture PostScript Text
3' UTR -1558.306283-0.248 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017360 - Anthrax_toxin_rcpt
IPR008399 - Anthrax_toxin_rcpt_C
IPR008400 - Anthrax_toxin_rcpt_extracel
IPR002035 - VWF_A

Pfam Domains:
PF00092 - von Willebrand factor type A domain
PF05586 - Anthrax receptor C-terminus region
PF05587 - Anthrax receptor extracellular domain
PF13519 - von Willebrand factor type A domain

SCOP Domains:
81296 - E set domains
53300 - vWA-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1SHT - X-ray MuPIT 1SHU - X-ray MuPIT 1T6B - X-ray MuPIT 1TZN - X-ray


ModBase Predicted Comparative 3D Structure on P58335
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0038023 signaling receptor activity
GO:0046872 metal ion binding

Biological Process:
GO:0007165 signal transduction
GO:0022414 reproductive process
GO:1901998 toxin transport

Cellular Component:
GO:0005576 extracellular region
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005886 plasma membrane
GO:0009897 external side of plasma membrane
GO:0009986 cell surface
GO:0010008 endosome membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK023450 - Homo sapiens cDNA FLJ13388 fis, clone PLACE1001168.
AK055636 - Homo sapiens cDNA FLJ31074 fis, clone HSYRA2001476.
AB209913 - Homo sapiens mRNA for anthrax toxin receptor 2 variant protein.
AL832851 - Homo sapiens mRNA; cDNA DKFZp667K1925 (from clone DKFZp667K1925).
BC114374 - Homo sapiens anthrax toxin receptor 2, mRNA (cDNA clone IMAGE:40036393), partial cds.
BC034001 - Homo sapiens anthrax toxin receptor 2, mRNA (cDNA clone IMAGE:4894326), partial cds.
BC107876 - Homo sapiens anthrax toxin receptor 2, mRNA (cDNA clone MGC:111533 IMAGE:6108432), complete cds.
AK091721 - Homo sapiens cDNA FLJ34402 fis, clone HCHON2001505.
AX747144 - Sequence 669 from Patent EP1308459.
KJ903673 - Synthetic construct Homo sapiens clone ccsbBroadEn_13067 ANTXR2 gene, encodes complete protein.
KR711302 - Synthetic construct Homo sapiens clone CCSBHm_00022447 ANTXR2 (ANTXR2) mRNA, encodes complete protein.
KR711303 - Synthetic construct Homo sapiens clone CCSBHm_00022449 ANTXR2 (ANTXR2) mRNA, encodes complete protein.
KR711304 - Synthetic construct Homo sapiens clone CCSBHm_00022450 ANTXR2 (ANTXR2) mRNA, encodes complete protein.
AB527650 - Synthetic construct DNA, clone: pF1KB5646, Homo sapiens ANTXR2 gene for anthrax toxin receptor 2, without stop codon, in Flexi system.
BC042596 - Homo sapiens anthrax toxin receptor 2, mRNA (cDNA clone IMAGE:5179412), partial cds.
BC047345 - Homo sapiens anthrax toxin receptor 2, mRNA (cDNA clone IMAGE:4155268).
AL110207 - Homo sapiens mRNA; cDNA DKFZp586P1622 (from clone DKFZp586P1622).
AL831848 - Homo sapiens mRNA; cDNA DKFZp586P1622 (from clone DKFZp586P1622).
JD274053 - Sequence 255077 from Patent EP1572962.
JD094043 - Sequence 75067 from Patent EP1572962.
JD086458 - Sequence 67482 from Patent EP1572962.
JD490006 - Sequence 471030 from Patent EP1572962.
JD372491 - Sequence 353515 from Patent EP1572962.
JD082311 - Sequence 63335 from Patent EP1572962.
AY040326 - Homo sapiens capillary morphogenesis protein-2 mRNA, complete cds.
AY233452 - Homo sapiens capillary morphogenesis protein 2 (CMG2) mRNA, partial cds; alternatively spliced.
JD087920 - Sequence 68944 from Patent EP1572962.
JD418906 - Sequence 399930 from Patent EP1572962.
JD494529 - Sequence 475553 from Patent EP1572962.
JD257572 - Sequence 238596 from Patent EP1572962.
JD383779 - Sequence 364803 from Patent EP1572962.
JD379318 - Sequence 360342 from Patent EP1572962.
JD121260 - Sequence 102284 from Patent EP1572962.
JD107248 - Sequence 88272 from Patent EP1572962.
JD341206 - Sequence 322230 from Patent EP1572962.
JD139065 - Sequence 120089 from Patent EP1572962.
JD089573 - Sequence 70597 from Patent EP1572962.
JD279261 - Sequence 260285 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P58335 (Reactome details) participates in the following event(s):

R-HSA-5210918 PA83 binds ANTXR2
R-HSA-5210912 Furin cleaves ANTXR2-bound PA83 to yield PA63
R-HSA-5210932 ANTXR2-bound PA63 forms oligomers
R-HSA-5210892 EF and LF bind to PA63:ANTXR2 oligomer
R-HSA-5210891 Uptake and function of anthrax toxins
R-HSA-5339562 Uptake and actions of bacterial toxins
R-HSA-5663205 Infectious disease
R-HSA-1643685 Disease
R-HSA-5210918 PA83 binds ANTXR2
R-HSA-5210912 Furin cleaves ANTXR2-bound PA83 to yield PA63
R-HSA-5210932 ANTXR2-bound PA63 forms oligomers
R-HSA-5210892 EF and LF bind to PA63:ANTXR2 oligomer
R-HSA-5210891 Uptake and function of anthrax toxins
R-HSA-5339562 Uptake and actions of bacterial toxins
R-HSA-5663205 Infectious disease
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: ANTR2_HUMAN, ANTXR2 , CMG2 , ENST00000403729.1, ENST00000403729.2, ENST00000403729.3, ENST00000403729.4, ENST00000403729.5, ENST00000403729.6, NM_058172, P58335, Q4W5H6, Q59E98, Q5JPE9, Q86UI1, Q8N4J8, Q8NB13, Q96NC7, uc319cjc.1, uc319cjc.2
UCSC ID: ENST00000403729.7_7
RefSeq Accession: NM_058172.6
Protein: P58335 (aka ANTR2_HUMAN or ATR2_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ANTXR2:
sys-h (Hyaline Fibromatosis Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.