Human Gene AP1G1 (ENST00000299980.9_12) from GENCODE V47lift37
  Description: adaptor related protein complex 1 subunit gamma 1, transcript variant 2 (from RefSeq NM_001128.6)
Gencode Transcript: ENST00000299980.9_12
Gencode Gene: ENSG00000166747.13_18
Transcript (Including UTRs)
   Position: hg19 chr16:71,762,903-71,842,737 Size: 79,835 Total Exon Count: 23 Strand: -
Coding Region
   Position: hg19 chr16:71,766,961-71,823,382 Size: 56,422 Coding Exon Count: 22 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:71,762,903-71,842,737)mRNA (may differ from genome)Protein (822 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AP1G1_HUMAN
DESCRIPTION: RecName: Full=AP-1 complex subunit gamma-1; AltName: Full=Adapter-related protein complex 1 subunit gamma-1; AltName: Full=Adaptor protein complex AP-1 subunit gamma-1; AltName: Full=Clathrin assembly protein complex 1 gamma-1 large chain; AltName: Full=Gamma1-adaptin; AltName: Full=Golgi adaptor HA1/AP1 adaptin subunit gamma-1;
FUNCTION: Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
SUBUNIT: Adaptor protein complex 1 (AP-1) is a heterotetramer composed of two large adaptins (gamma-type subunit AP1G1 and beta- type subunit AP1B1), a medium adaptin (mu-type subunit AP1M1 or AP1M2) and a small adaptin (sigma-type subunit AP1S1 or AP1S2 or AP1S3). Binds RABEP1 and SYNRG. Interacts (via GAE domain) with AP1AR (via coiled-coil domain).
INTERACTION: Q15276:RABEP1; NbExp=2; IntAct=EBI-447609, EBI-447043;
SUBCELLULAR LOCATION: Golgi apparatus. Cytoplasmic vesicle, clathrin-coated vesicle membrane; Peripheral membrane protein; Cytoplasmic side. Note=Component of the coat surrounding the cytoplasmic face of coated vesicles located at the Golgi complex.
TISSUE SPECIFICITY: Widely expressed.
SIMILARITY: Belongs to the adaptor complexes large subunit family.
SIMILARITY: Contains 1 GAE domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: AP1G1
Diseases sorted by gene-association score: hypoactive sexual desire disorder (7)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.13 RPKM in Testis
Total median expression: 533.10 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -19.7075-0.263 Picture PostScript Text
3' UTR -1135.804058-0.280 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017107 - AP1_complex_gsu
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR002553 - Clathrin/coatomer_adapt-like_N
IPR008152 - Clathrin_a/b/g-adaptin_app_Ig
IPR008153 - Clathrin_g-adaptin_app
IPR013041 - Coatomer/clathrin_app_Ig-like

Pfam Domains:
PF01602 - Adaptin N terminal region
PF02883 - Adaptin C-terminal domain
PF12717 - non-SMC mitotic condensation complex subunit 1

SCOP Domains:
48371 - ARM repeat
48431 - Lipovitellin-phosvitin complex, superhelical domain
49348 - Clathrin adaptor appendage domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1IU1 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O43747
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005215 transporter activity
GO:0005515 protein binding
GO:0017137 Rab GTPase binding
GO:0019894 kinesin binding
GO:0030742 GTP-dependent protein binding

Biological Process:
GO:0006886 intracellular protein transport
GO:0015031 protein transport
GO:0016192 vesicle-mediated transport
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0032438 melanosome organization
GO:0035646 endosome to melanosome transport
GO:0043323 positive regulation of natural killer cell degranulation
GO:0045954 positive regulation of natural killer cell mediated cytotoxicity
GO:0050690 regulation of defense response to virus by virus
GO:0090160 Golgi to lysosome transport

Cellular Component:
GO:0000139 Golgi membrane
GO:0005737 cytoplasm
GO:0005765 lysosomal membrane
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0016020 membrane
GO:0030117 membrane coat
GO:0030119 AP-type membrane coat adaptor complex
GO:0030121 AP-1 adaptor complex
GO:0030131 clathrin adaptor complex
GO:0030136 clathrin-coated vesicle
GO:0030659 cytoplasmic vesicle membrane
GO:0030665 clathrin-coated vesicle membrane
GO:0031410 cytoplasmic vesicle
GO:0032588 trans-Golgi network membrane
GO:0043231 intracellular membrane-bounded organelle
GO:0055037 recycling endosome


-  Descriptions from all associated GenBank mRNAs
  BC036283 - Homo sapiens adaptor-related protein complex 1, gamma 1 subunit, mRNA (cDNA clone MGC:18255 IMAGE:4158263), complete cds.
AK128078 - Homo sapiens cDNA FLJ46199 fis, clone TESTI4007965, highly similar to AP-1 complex subunit gamma-1.
Y12226 - H.sapiens mRNA for gamma-adaptin.
AK293233 - Homo sapiens cDNA FLJ55047 complete cds, highly similar to AP-1 complex subunit gamma-1 (Adapter-related protein complex 1 gamma-1 subunit) (Gamma-adaptin)(Adaptor protein complex AP-1 gamma-1 subunit) (Golgi adaptor HA1/AP1 adaptin subunit gamma-1) (Clathrin assembly protein complex 1 gamma-1 large chain).
AB015317 - Homo sapiens mRNA for gamma1-adaptin, complete cds.
AK225906 - Homo sapiens mRNA for adaptor-related protein complex 1, gamma 1 subunit isoform a variant, clone: FCC119H01.
AK314484 - Homo sapiens cDNA, FLJ95292.
AK299630 - Homo sapiens cDNA FLJ55587 complete cds, highly similar to AP-1 complex subunit gamma-1 (Adapter-relatedprotein complex 1 gamma- 1 subunit) (Gamma-adaptin)(Adaptor protein complex AP-1 gamma-1 subunit) (Golgiadaptor HA1/AP1 adaptin subunit gamma-1) (Clathrinassembly protein complex 1 gamma-1 large chain).
AK294546 - Homo sapiens cDNA FLJ52990 complete cds, highly similar to AP-1 complex subunit gamma-1 (Adapter-related protein complex 1 gamma-1 subunit) (Gamma-adaptin)(Adaptor protein complex AP-1 gamma-1 subunit) (Golgiadaptor HA1/AP1 adaptin subunit gamma-1) (Clathrin assembly protein complex 1 gamma-1 large chain).
AK025020 - Homo sapiens cDNA: FLJ21367 fis, clone COL03051.
BC003414 - Homo sapiens adaptor-related protein complex 1, gamma 1 subunit, mRNA (cDNA clone IMAGE:3451138), partial cds.
BC051747 - Homo sapiens adaptor-related protein complex 1, gamma 1 subunit, mRNA (cDNA clone IMAGE:5263221).
JD023460 - Sequence 4484 from Patent EP1572962.
JD029278 - Sequence 10302 from Patent EP1572962.
JD029563 - Sequence 10587 from Patent EP1572962.
AL110198 - Homo sapiens mRNA; cDNA DKFZp586B1622 (from clone DKFZp586B1622).
AK055122 - Homo sapiens cDNA FLJ30560 fis, clone BRAWH2004217, highly similar to AP-1 complex subunit gamma-1.
JD532463 - Sequence 513487 from Patent EP1572962.
JD240790 - Sequence 221814 from Patent EP1572962.
JD560275 - Sequence 541299 from Patent EP1572962.
JD043818 - Sequence 24842 from Patent EP1572962.
JD358977 - Sequence 340001 from Patent EP1572962.
JD206400 - Sequence 187424 from Patent EP1572962.
JD060351 - Sequence 41375 from Patent EP1572962.
JD291232 - Sequence 272256 from Patent EP1572962.
JD554750 - Sequence 535774 from Patent EP1572962.
JD242078 - Sequence 223102 from Patent EP1572962.
JD327792 - Sequence 308816 from Patent EP1572962.
JD061385 - Sequence 42409 from Patent EP1572962.
JD115334 - Sequence 96358 from Patent EP1572962.
JD185796 - Sequence 166820 from Patent EP1572962.
JD367344 - Sequence 348368 from Patent EP1572962.
JD185548 - Sequence 166572 from Patent EP1572962.
JD327638 - Sequence 308662 from Patent EP1572962.
JD533406 - Sequence 514430 from Patent EP1572962.
JD120812 - Sequence 101836 from Patent EP1572962.
HM005334 - Homo sapiens clone HTL-T-21 testicular tissue protein Li 21 mRNA, complete cds.
JD327535 - Sequence 308559 from Patent EP1572962.
EU832486 - Synthetic construct Homo sapiens clone HAIB:100067515; DKFZo008E0329 adaptor-related protein complex 1, gamma 1 subunit protein (AP1G1) gene, encodes complete protein.
EU832566 - Synthetic construct Homo sapiens clone HAIB:100067595; DKFZo004E0330 adaptor-related protein complex 1, gamma 1 subunit protein (AP1G1) gene, encodes complete protein.
AB527830 - Synthetic construct DNA, clone: pF1KB5777, Homo sapiens AP1G1 gene for adaptor-related protein complex 1, gamma 1 subunit, without stop codon, in Flexi system.
AL050025 - Homo sapiens mRNA; cDNA DKFZp564D066 (from clone DKFZp564D066).

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O43747 (Reactome details) participates in the following event(s):

R-HSA-182279 Formation of MHC I:Nef:AP-1:PACS-1 Complex
R-HSA-421833 Vamp And trans-Golgi Network AP-1 Binding Coupled With Cargo Capture
R-HSA-432712 Vamp And trans-Golgi Network AP-1 Binding Coupled With Cargo Capture On Lysosome Vesicle Destined Golgi Membrane
R-HSA-421836 trans-Golgi Network Derived Vesicle Uncoating
R-HSA-432688 trans-Golgi Network Derived Lysosomal Vesicle Uncoating
R-HSA-2213236 TGN-lysosome vesicle uncoating and release of nonameric complex to lysosome
R-HSA-182286 Transport of MHC I:Nef:AP-1:PACS-1 Complex
R-HSA-8951498 Dissociation of Arf1:GDP, AP-1 Clathrin coated nonameric complex
R-HSA-421831 trans-Golgi Network Coat Assembly
R-HSA-432706 trans-Golgi Network Lysosome Vesicle Destined Membrane Coat Assembly
R-HSA-421835 trans-Golgi Network Vesicle Scission
R-HSA-432707 trans-Golgi Network Lysosomal Vesicle Scission
R-HSA-2130641 Translocation of TGN-lysosome vesicle to lysosome
R-HSA-5333658 CLAT:AP1:CLVS bind PI(3,5)P2
R-HSA-164940 Nef mediated downregulation of MHC class I complex cell surface expression
R-HSA-432722 Golgi Associated Vesicle Biogenesis
R-HSA-432720 Lysosome Vesicle Biogenesis
R-HSA-2132295 MHC class II antigen presentation
R-HSA-164938 Nef-mediates down modulation of cell surface receptors by recruiting them to clathrin adapters
R-HSA-421837 Clathrin derived vesicle budding
R-HSA-1280218 Adaptive Immune System
R-HSA-164952 The role of Nef in HIV-1 replication and disease pathogenesis
R-HSA-199992 trans-Golgi Network Vesicle Budding
R-HSA-168256 Immune System
R-HSA-162909 Host Interactions of HIV factors
R-HSA-199991 Membrane Trafficking
R-HSA-162906 HIV Infection
R-HSA-5653656 Vesicle-mediated transport
R-HSA-5663205 Infectious disease
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: ADTG, AP1G1_HUMAN, CLAPG1, ENST00000299980.1, ENST00000299980.2, ENST00000299980.3, ENST00000299980.4, ENST00000299980.5, ENST00000299980.6, ENST00000299980.7, ENST00000299980.8, NM_001128, O43747, O75709, O75842, Q9UG09, Q9Y3U4, uc317mmr.1, uc317mmr.2
UCSC ID: ENST00000299980.9_12
RefSeq Accession: NM_001128.6
Protein: O43747 (aka AP1G1_HUMAN or A1G1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.