Human Gene ARG2 (ENST00000261783.4_4) from GENCODE V47lift37
  Description: arginase 2 (from RefSeq NM_001172.4)
Gencode Transcript: ENST00000261783.4_4
Gencode Gene: ENSG00000081181.8_7
Transcript (Including UTRs)
   Position: hg19 chr14:68,086,637-68,118,425 Size: 31,789 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg19 chr14:68,086,695-68,117,637 Size: 30,943 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:68,086,637-68,118,425)mRNA (may differ from genome)Protein (354 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ARGI2_HUMAN
DESCRIPTION: RecName: Full=Arginase-2, mitochondrial; EC=3.5.3.1; AltName: Full=Kidney-type arginase; AltName: Full=Non-hepatic arginase; AltName: Full=Type II arginase; Flags: Precursor;
FUNCTION: May play a role in the regulation of extra-urea cycle arginine metabolism and also in down-regulation of nitric oxide synthesis. Extrahepatic arginase functions to regulate L-arginine bioavailability to NO synthase. Since NO synthase is found in the penile corpus cavernosum smooth muscle, the clitoral corpus cavernosum and the vagina, arginase II plays a role in both male and female sexual arousal. It is therefore a potential target for the treatment of male and female sexual arousal disorders.
CATALYTIC ACTIVITY: L-arginine + H(2)O = L-ornithine + urea.
COFACTOR: Binds 2 manganese ions per subunit.
PATHWAY: Nitrogen metabolism; urea cycle; L-ornithine and urea from L-arginine: step 1/1.
SUBUNIT: Homotrimer.
SUBCELLULAR LOCATION: Mitochondrion.
TISSUE SPECIFICITY: Expressed most strongly in kidney and prostate, much less strongly in the brain, skeletal muscle, placenta, lung, mammary gland, macrophage, uterus, testis and gut, but apparently not in the liver, heart and pancreas.
SIMILARITY: Belongs to the arginase family.
WEB RESOURCE: Name=Wikipedia; Note=Arginase entry; URL="http://en.wikipedia.org/wiki/Arginase";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ARG2
Diseases sorted by gene-association score: argininemia (7), impotence (2), exudative vitreoretinopathy 1 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.31 RPKM in Prostate
Total median expression: 239.54 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -16.0058-0.276 Picture PostScript Text
3' UTR -194.60788-0.247 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR014033 - Arginase
IPR006035 - Ureohydrolase
IPR023696 - Ureohydrolase_domain
IPR020855 - Ureohydrolase_Mn_BS

Pfam Domains:
PF00491 - Arginase family

SCOP Domains:
52768 - Arginase/deacetylase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1PQ3 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P78540
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004053 arginase activity
GO:0016787 hydrolase activity
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0046872 metal ion binding

Biological Process:
GO:0000050 urea cycle
GO:0001657 ureteric bud development
GO:0002250 adaptive immune response
GO:0002376 immune system process
GO:0002829 negative regulation of type 2 immune response
GO:0006525 arginine metabolic process
GO:0006809 nitric oxide biosynthetic process
GO:0006941 striated muscle contraction
GO:0032720 negative regulation of tumor necrosis factor production
GO:0045087 innate immune response
GO:0050706 regulation of interleukin-1 beta secretion
GO:0071641 negative regulation of macrophage inflammatory protein 1 alpha production
GO:0071644 negative regulation of chemokine (C-C motif) ligand 4 production
GO:0071650 negative regulation of chemokine (C-C motif) ligand 5 production
GO:1900425 negative regulation of defense response to bacterium
GO:1903426 regulation of reactive oxygen species biosynthetic process
GO:1904468 negative regulation of tumor necrosis factor secretion
GO:1905077 negative regulation of interleukin-17 secretion
GO:1905403 negative regulation of activated CD8-positive, alpha-beta T cell apoptotic process
GO:2000562 negative regulation of CD4-positive, alpha-beta T cell proliferation
GO:2000666 negative regulation of interleukin-13 secretion
GO:2000774 positive regulation of cellular senescence

Cellular Component:
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix


-  Descriptions from all associated GenBank mRNAs
  BC029050 - Homo sapiens arginase, type II, mRNA (cDNA clone MGC:35329 IMAGE:5179867), complete cds.
LP895292 - Sequence 156 from Patent EP3253886.
AY074489 - Homo sapiens arginase type II mRNA, complete cds.
BC008464 - Homo sapiens arginase, type II, mRNA (cDNA clone MGC:14727 IMAGE:4274290), complete cds.
U75667 - Human arginase II mRNA, complete cds.
AK312484 - Homo sapiens cDNA, FLJ92843, Homo sapiens arginase, type II (ARG2), nuclear gene encodingmitochondrial protein, mRNA.
D86724 - Homo sapiens mRNA for nonhepatic arginase, complete cds.
BC001350 - Homo sapiens arginase, type II, mRNA (cDNA clone MGC:8669 IMAGE:2964483), complete cds.
U82256 - Homo sapiens arginase type II mRNA, complete cds.
KJ890705 - Synthetic construct Homo sapiens clone ccsbBroadEn_00099 ARG2 gene, encodes complete protein.
AB587380 - Synthetic construct DNA, clone: pF1KB5147, Homo sapiens ARG2 gene for arginase, type II, without stop codon, in Flexi system.
CR536550 - Homo sapiens full open reading frame cDNA clone RZPDo834G0920D for gene ARG2, arginase, type II; complete cds, incl. stopcodon.
JD285257 - Sequence 266281 from Patent EP1572962.
JD297265 - Sequence 278289 from Patent EP1572962.
JD071080 - Sequence 52104 from Patent EP1572962.
JD083550 - Sequence 64574 from Patent EP1572962.
JD289749 - Sequence 270773 from Patent EP1572962.
CU678401 - Synthetic construct Homo sapiens gateway clone IMAGE:100020653 3' read VTI1B mRNA.
JD172456 - Sequence 153480 from Patent EP1572962.
JD315696 - Sequence 296720 from Patent EP1572962.
JD107266 - Sequence 88290 from Patent EP1572962.
JD370594 - Sequence 351618 from Patent EP1572962.
JD312887 - Sequence 293911 from Patent EP1572962.
JD565469 - Sequence 546493 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P78540 (Reactome details) participates in the following event(s):

R-HSA-452036 arginine + H2O => ornithine + urea [ARG2]
R-HSA-70635 Urea cycle
R-HSA-351202 Metabolism of polyamines
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ARGI2_HUMAN, B2R690, ENST00000261783.1, ENST00000261783.2, ENST00000261783.3, NM_001172, P78540, Q6FHY8, uc317gtp.1, uc317gtp.2
UCSC ID: ENST00000261783.4_4
RefSeq Accession: NM_001172.4
Protein: P78540 (aka ARGI2_HUMAN or ARG2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.