Human Gene ARHGAP9 (ENST00000393791.8_11) from GENCODE V47lift37
  Description: Rho GTPase activating protein 9, transcript variant 1 (from RefSeq NM_032496.4)
Gencode Transcript: ENST00000393791.8_11
Gencode Gene: ENSG00000123329.20_21
Transcript (Including UTRs)
   Position: hg19 chr12:57,866,052-57,873,649 Size: 7,598 Total Exon Count: 18 Strand: -
Coding Region
   Position: hg19 chr12:57,866,300-57,873,189 Size: 6,890 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:57,866,052-57,873,649)mRNA (may differ from genome)Protein (731 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RHG09_HUMAN
DESCRIPTION: RecName: Full=Rho GTPase-activating protein 9; AltName: Full=Rho-type GTPase-activating protein 9;
FUNCTION: GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state. Has a substantial GAP activity toward CDC42 and RAC1 and less toward RHOA. Has a role in regulating adhesion of hematopoietic cells to the extracellular matrix.
SUBUNIT: Interacts with FASLG.
TISSUE SPECIFICITY: Predominantly expressed in peripheral blood leukocytes, spleen, and thymus.
SIMILARITY: Contains 1 PH domain.
SIMILARITY: Contains 1 Rho-GAP domain.
SIMILARITY: Contains 1 SH3 domain.
SIMILARITY: Contains 1 WW domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ARHGAP9
Diseases sorted by gene-association score: retinitis pigmentosa 18 (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 117.04 RPKM in Whole Blood
Total median expression: 320.42 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -33.60155-0.217 Picture PostScript Text
3' UTR -77.10248-0.311 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011993 - PH_like_dom
IPR001849 - Pleckstrin_homology
IPR015767 - Rho_GTPase_activating
IPR008936 - Rho_GTPase_activation_prot
IPR000198 - RhoGAP_dom
IPR001452 - SH3_domain
IPR001202 - WW_Rsp5_WWP

Pfam Domains:
PF00018 - SH3 domain
PF00169 - PH domain
PF00620 - RhoGAP domain

SCOP Domains:
48350 - GTPase activation domain, GAP
50044 - SH3-domain
50729 - PH domain-like
51045 - WW domain
55060 - GHMP Kinase, C-terminal domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2P0D - X-ray MuPIT 2P0F - X-ray MuPIT 2P0H - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9BRR9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005096 GTPase activator activity
GO:0005515 protein binding
GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding
GO:0008289 lipid binding

Biological Process:
GO:0007165 signal transduction
GO:0043312 neutrophil degranulation
GO:0043547 positive regulation of GTPase activity
GO:0051056 regulation of small GTPase mediated signal transduction

Cellular Component:
GO:0005576 extracellular region
GO:0005829 cytosol
GO:0034774 secretory granule lumen


-  Descriptions from all associated GenBank mRNAs
  AL713803 - Homo sapiens mRNA; cDNA DKFZp667F149 (from clone DKFZp667F149).
AK092763 - Homo sapiens cDNA FLJ35444 fis, clone SMINT2003505.
AX747713 - Sequence 1238 from Patent EP1308459.
BC006107 - Homo sapiens Rho GTPase activating protein 9, mRNA (cDNA clone MGC:12959 IMAGE:3010091), complete cds.
AF161339 - Homo sapiens HSPC076 mRNA, partial cds.
AK057573 - Homo sapiens cDNA FLJ33011 fis, clone THYMU1000359, highly similar to Rho-GTPase-activating protein 9.
AK131415 - Homo sapiens cDNA FLJ16525 fis, clone OCBBF2005433, weakly similar to N-CHIMAERIN.
BC011820 - Homo sapiens, clone IMAGE:3619501, mRNA, partial cds.
AB051853 - Homo sapiens ARHGAP9 mRNA for rho-GTPase activating protein, complete cds.
AB030239 - Homo sapiens mRNA for RGL1, complete cds.
JD549563 - Sequence 530587 from Patent EP1572962.
JD393786 - Sequence 374810 from Patent EP1572962.
AK301095 - Homo sapiens cDNA FLJ55768 complete cds, highly similar to Rho-GTPase-activating protein 9.
JD265560 - Sequence 246584 from Patent EP1572962.
JD495695 - Sequence 476719 from Patent EP1572962.
JD052203 - Sequence 33227 from Patent EP1572962.
DQ896430 - Synthetic construct Homo sapiens clone IMAGE:100010890; FLH194246.01L; RZPDo839H0169D Rho GTPase activating protein 9 (ARHGAP9) gene, encodes complete protein.
EU176437 - Synthetic construct Homo sapiens clone IMAGE:100006513; FLH194253.01X; RZPDo839E07252D Rho GTPase activating protein 9 (ARHGAP9) gene, encodes complete protein.
AB528344 - Synthetic construct DNA, clone: pF1KB5769, Homo sapiens ARHGAP9 gene for Rho GTPase activating protein 9, without stop codon, in Flexi system.
AK300910 - Homo sapiens cDNA FLJ59996 complete cds, highly similar to Rho-GTPase-activating protein 9.
AK304107 - Homo sapiens cDNA FLJ58347 complete cds, highly similar to Rho-GTPase-activating protein 9.
JD029749 - Sequence 10773 from Patent EP1572962.
JD466192 - Sequence 447216 from Patent EP1572962.
JD086913 - Sequence 67937 from Patent EP1572962.
JD308212 - Sequence 289236 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9BRR9 (Reactome details) participates in the following event(s):

R-HSA-6798748 Exocytosis of secretory granule lumen proteins
R-HSA-194922 GAPs inactivate Rho GTPase:GTP by hydrolysis
R-HSA-6798695 Neutrophil degranulation
R-HSA-194840 Rho GTPase cycle
R-HSA-168249 Innate Immune System
R-HSA-194315 Signaling by Rho GTPases
R-HSA-168256 Immune System
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B4DVI3, E9PDX9, ENST00000393791.1, ENST00000393791.2, ENST00000393791.3, ENST00000393791.4, ENST00000393791.5, ENST00000393791.6, ENST00000393791.7, NM_032496, Q8NAF3, Q8TCJ3, Q8WYR0, Q96EZ2, Q96S74, Q9BRR9, RHG09_HUMAN, uc318wdf.1, uc318wdf.2
UCSC ID: ENST00000393791.8_11
RefSeq Accession: NM_032496.4
Protein: Q9BRR9 (aka RHG09_HUMAN or RHG9_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.