Human Gene ARHGEF2 (ENST00000361247.9_12) from GENCODE V47lift37
  Description: Rho/Rac guanine nucleotide exchange factor 2, transcript variant 1 (from RefSeq NM_001162383.2)
Gencode Transcript: ENST00000361247.9_12
Gencode Gene: ENSG00000116584.22_17
Transcript (Including UTRs)
   Position: hg19 chr1:155,916,645-155,948,338 Size: 31,694 Total Exon Count: 22 Strand: -
Coding Region
   Position: hg19 chr1:155,917,733-155,948,218 Size: 30,486 Coding Exon Count: 22 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:155,916,645-155,948,338)mRNA (may differ from genome)Protein (986 aa)
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ARHG2_HUMAN
DESCRIPTION: RecName: Full=Rho guanine nucleotide exchange factor 2; AltName: Full=Guanine nucleotide exchange factor H1; Short=GEF-H1; AltName: Full=Microtubule-regulated Rho-GEF; AltName: Full=Proliferating cell nucleolar antigen p40;
FUNCTION: Activates Rho-GTPases by promoting the exchange of GDP for GTP. May be involved in epithelial barrier permeability, cell motility and polarization, dendritic spine morphology, antigen presentation, leukemic cell differentiation, cell cycle regulation, and cancer. Binds Rac-GTPases, but does not seem to promote nucleotide exchange activity toward Rac-GTPases, which was uniquely reported in PubMed:9857026. May stimulate instead the cortical activity of Rac. Inactive toward CDC42, TC10, or Ras- GTPases. Forms an intracellular sensing system along with NOD1 for the detection of microbial effectors during cell invasion by pathogens. Required for RHOA and RIP2 dependent NF-kappaB signaling pathways activation upon S.flexneri cell invasion. Involved not only in sensing peptidoglycan (PGN)-derived muropeptides through NOD1 that is independent of its GEF activity, but also in the activation of NF-kappaB by Shigella effector proteins (IpgB2 and OspB) which requires its GEF activity and the activation of RhoA.
SUBUNIT: Interacts with 14-3-3 zeta; when phosphorylated at Ser- 886. Interacts with the kinases PAK4, AURKA and MAPK1. Interacts with RHOA and RAC1. Interacts with NOD1. Interacts (via the N- terminal zinc finger) with CAPN6 (via domain II) (By similarity).
SUBCELLULAR LOCATION: Cytoplasm. Cell junction, tight junction. Golgi apparatus. Cytoplasm, cytoskeleton, spindle. Cell projection, ruffle membrane. Note=Localizes to the tips of cortical microtubules of the mitotic spindle during cell division, and is further released upon microtubule depolymerization. Recruited into membrane ruffles induced by S.flexneri at tight junctions of polarized epithelial cells.
DOMAIN: The DH (DBL-homology) domain interacts with and promotes loading of GTP on RhoA.
DOMAIN: The PH (pleckstrin-homology) domain is involved in microtubule binding and targeting to tight junctions.
PTM: Phosphorylation of Ser-886 by PAK1 induces binding to protein 14-3-3 zeta, promoting its relocation to microtubules and the inhibition of its activity. Phosphorylated by AURKA and CDK1 during mitosis, which negatively regulates its activity. Phosphorylation by MAPK1 or MAPK3 increases nucleotide exchange activity. Phosphorylation by PAK4 releases GEF-H1 from the microtubules.
SIMILARITY: Contains 1 DH (DBL-homology) domain.
SIMILARITY: Contains 1 PH domain.
SIMILARITY: Contains 1 phorbol-ester/DAG-type zinc finger.
SEQUENCE CAUTION: Sequence=AAC97383.1; Type=Miscellaneous discrepancy; Note=Sequence differs at a large extent from the sequence shown in the paper; Sequence=AAH20567.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAA31626.3; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAA33634.1; Type=Frameshift; Positions=887, 984;
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/ARHGEF2ID43150ch1q22.html";
WEB RESOURCE: Name=Wikipedia; Note=ARHGEF2 entry; URL="http://en.wikipedia.org/wiki/ARHGEF2";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ARHGEF2
Diseases sorted by gene-association score: neurodevelopmental disorder with midbrain and hindbrain malformations* (950), unilateral focal polymicrogyria (18), aarskog-scott syndrome (13), scott syndrome (7), motor neuron disease (3)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 31.15 RPKM in Lung
Total median expression: 746.52 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -33.70120-0.281 Picture PostScript Text
3' UTR -358.601088-0.330 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000219 - DH-domain
IPR011993 - PH_like_dom
IPR001849 - Pleckstrin_homology
IPR002219 - Prot_Kinase_C-like_PE/DAG-bd
IPR015721 - RhoGEF-like

Pfam Domains:
PF00621 - RhoGEF domain
PF17838 - PH domain

SCOP Domains:
48065 - DBL homology domain (DH-domain)
50729 - PH domain-like
57850 - RING/U-box
57889 - Cysteine-rich domain
57903 - FYVE/PHD zinc finger

ModBase Predicted Comparative 3D Structure on Q92974
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005085 guanyl-nucleotide exchange factor activity
GO:0005089 Rho guanyl-nucleotide exchange factor activity
GO:0005515 protein binding
GO:0008017 microtubule binding
GO:0008134 transcription factor binding
GO:0008270 zinc ion binding
GO:0017048 Rho GTPase binding
GO:0030676 Rac guanyl-nucleotide exchange factor activity
GO:0046872 metal ion binding
GO:0048365 Rac GTPase binding

Biological Process:
GO:0000132 establishment of mitotic spindle orientation
GO:0000902 cell morphogenesis
GO:0002376 immune system process
GO:0006886 intracellular protein transport
GO:0007015 actin filament organization
GO:0007026 negative regulation of microtubule depolymerization
GO:0007049 cell cycle
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007275 multicellular organism development
GO:0007399 nervous system development
GO:0030154 cell differentiation
GO:0032755 positive regulation of interleukin-6 production
GO:0032760 positive regulation of tumor necrosis factor production
GO:0035023 regulation of Rho protein signal transduction
GO:0035556 intracellular signal transduction
GO:0042127 regulation of cell proliferation
GO:0043065 positive regulation of apoptotic process
GO:0045087 innate immune response
GO:0045666 positive regulation of neuron differentiation
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation
GO:0050768 negative regulation of neurogenesis
GO:0051056 regulation of small GTPase mediated signal transduction
GO:0051092 positive regulation of NF-kappaB transcription factor activity
GO:0051301 cell division
GO:0055059 asymmetric neuroblast division
GO:0060546 negative regulation of necroptotic process
GO:0071225 cellular response to muramyl dipeptide
GO:0071356 cellular response to tumor necrosis factor
GO:0071474 cellular hyperosmotic response
GO:0071802 negative regulation of podosome assembly
GO:1902042 negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:1902219 negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress
GO:2001224 positive regulation of neuron migration

Cellular Component:
GO:0002102 podosome
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005886 plasma membrane
GO:0005923 bicellular tight junction
GO:0005925 focal adhesion
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0030054 cell junction
GO:0031410 cytoplasmic vesicle
GO:0031982 vesicle
GO:0032587 ruffle membrane
GO:0032991 macromolecular complex
GO:0042995 cell projection
GO:0043025 neuronal cell body
GO:0043198 dendritic shaft


-  Descriptions from all associated GenBank mRNAs
  JD483471 - Sequence 464495 from Patent EP1572962.
BC027722 - Homo sapiens, clone IMAGE:4636257, mRNA.
BC000265 - Homo sapiens cDNA clone IMAGE:3356293, **** WARNING: chimeric clone ****.
AL512715 - Homo sapiens mRNA; cDNA DKFZp547L106 (from clone DKFZp547L106).
AB014551 - Homo sapiens KIAA0651 mRNA for KIAA0651 protein.
AL832538 - Homo sapiens mRNA; cDNA DKFZp547P1516 (from clone DKFZp547P1516).
BC020567 - Homo sapiens rho/rac guanine nucleotide exchange factor (GEF) 2, mRNA (cDNA clone MGC:21557 IMAGE:4157775), complete cds.
JD528743 - Sequence 509767 from Patent EP1572962.
JD065052 - Sequence 46076 from Patent EP1572962.
JD133897 - Sequence 114921 from Patent EP1572962.
JD202638 - Sequence 183662 from Patent EP1572962.
JD203360 - Sequence 184384 from Patent EP1572962.
AK304548 - Homo sapiens cDNA FLJ55568 complete cds, highly similar to Rho/Rac guanine nucleotide exchange factor 2.
JD052478 - Sequence 33502 from Patent EP1572962.
JD445334 - Sequence 426358 from Patent EP1572962.
AK295924 - Homo sapiens cDNA FLJ60581 complete cds, highly similar to Rho/Rac guanine nucleotide exchange factor 2.
JD020727 - Sequence 1751 from Patent EP1572962.
JD030064 - Sequence 11088 from Patent EP1572962.
X15610 - Human mRNA for proliferating cell nucleolar antigen P40 C-terminal fragment.
U72206 - Human guanine nucleotide regulatory factor (LFP40) mRNA, complete cds.
JD500733 - Sequence 481757 from Patent EP1572962.
JD511282 - Sequence 492306 from Patent EP1572962.
JD525846 - Sequence 506870 from Patent EP1572962.
JD112700 - Sequence 93724 from Patent EP1572962.
JD119781 - Sequence 100805 from Patent EP1572962.
JD175224 - Sequence 156248 from Patent EP1572962.
JD396701 - Sequence 377725 from Patent EP1572962.
JD052391 - Sequence 33415 from Patent EP1572962.
JD307530 - Sequence 288554 from Patent EP1572962.
JD426399 - Sequence 407423 from Patent EP1572962.
JD528962 - Sequence 509986 from Patent EP1572962.
JD445737 - Sequence 426761 from Patent EP1572962.
JD168954 - Sequence 149978 from Patent EP1572962.
JD050772 - Sequence 31796 from Patent EP1572962.
JD127434 - Sequence 108458 from Patent EP1572962.
JD052386 - Sequence 33410 from Patent EP1572962.
JD470194 - Sequence 451218 from Patent EP1572962.
JD310679 - Sequence 291703 from Patent EP1572962.
JD268772 - Sequence 249796 from Patent EP1572962.
JD267832 - Sequence 248856 from Patent EP1572962.
AF486838 - Homo sapiens guanine nucleotide exchange factor GEF-H1 mRNA, complete cds.
BT007407 - Homo sapiens rho/rac guanine nucleotide exchange factor (GEF) 2 mRNA, complete cds.
DQ891489 - Synthetic construct clone IMAGE:100004119; FLH177420.01X; RZPDo839H09124D rho/rac guanine nucleotide exchange factor (GEF) 2 (ARHGEF2) gene, encodes complete protein.
KJ901951 - Synthetic construct Homo sapiens clone ccsbBroadEn_11345 ARHGEF2 gene, encodes complete protein.
DQ894678 - Synthetic construct Homo sapiens clone IMAGE:100009138; FLH177417.01L; RZPDo839H09123D rho/rac guanine nucleotide exchange factor (GEF) 2 (ARHGEF2) gene, encodes complete protein.
AM393305 - Synthetic construct Homo sapiens clone IMAGE:100001944 for hypothetical protein (ARHGEF2 gene).
AB385367 - Synthetic construct DNA, clone: pF1KA0651, Homo sapiens ARHGEF2 gene for Rho/Rac guanine nucleotide exchange factor 2, complete cds, without stop codon, in Flexi system.
JD022056 - Sequence 3080 from Patent EP1572962.
JD027618 - Sequence 8642 from Patent EP1572962.
JD019467 - Sequence 491 from Patent EP1572962.
JD028296 - Sequence 9320 from Patent EP1572962.
JD021705 - Sequence 2729 from Patent EP1572962.
JD031379 - Sequence 12403 from Patent EP1572962.
CU676564 - Synthetic construct Homo sapiens gateway clone IMAGE:100017512 5' read ARHGEF2 mRNA.
AK127366 - Homo sapiens cDNA FLJ45440 fis, clone BRSSN2007168, weakly similar to Mus musculus lymphoid blast crisis-like 1 (Lbcl1).

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q92974 (Reactome details) participates in the following event(s):

R-HSA-194913 GEFs activate Rho GTPase:GDP
R-HSA-419166 GEFs activate RhoA,B,C
R-HSA-205039 p75NTR indirectly activates RAC and Cdc42 via a guanyl-nucleotide exchange factor
R-HSA-194840 Rho GTPase cycle
R-HSA-416482 G alpha (12/13) signalling events
R-HSA-193648 NRAGE signals death through JNK
R-HSA-194315 Signaling by Rho GTPases
R-HSA-388396 GPCR downstream signalling
R-HSA-204998 Cell death signalling via NRAGE, NRIF and NADE
R-HSA-162582 Signal Transduction
R-HSA-372790 Signaling by GPCR
R-HSA-193704 p75 NTR receptor-mediated signalling
R-HSA-73887 Death Receptor Signalling

-  Other Names for This Gene
  Alternate Gene Symbols: ARHG2_HUMAN, D3DVA6, ENST00000361247.1, ENST00000361247.2, ENST00000361247.3, ENST00000361247.4, ENST00000361247.5, ENST00000361247.6, ENST00000361247.7, ENST00000361247.8, KIAA0651, LFP40, NM_001162383, O75142, Q15079, Q5VY92, Q8TDA3, Q8WUG4, Q92974, Q9H023, uc318byn.1, uc318byn.2
UCSC ID: ENST00000361247.9_12
RefSeq Accession: NM_001162383.2
Protein: Q92974 (aka ARHG2_HUMAN or ARH2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.