Human Gene ATP1B3 (ENST00000286371.8_4) from GENCODE V47lift37
  Description: ATPase Na+/K+ transporting subunit beta 3 (from RefSeq NM_001679.4)
Gencode Transcript: ENST00000286371.8_4
Gencode Gene: ENSG00000069849.11_11
Transcript (Including UTRs)
   Position: hg19 chr3:141,595,485-141,645,391 Size: 49,907 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr3:141,595,644-141,644,543 Size: 48,900 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:141,595,485-141,645,391)mRNA (may differ from genome)Protein (279 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AT1B3_HUMAN
DESCRIPTION: RecName: Full=Sodium/potassium-transporting ATPase subunit beta-3; AltName: Full=Sodium/potassium-dependent ATPase subunit beta-3; Short=ATPB-3; AltName: CD_antigen=CD298;
FUNCTION: This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. The exact function of the beta-3 subunit is not known.
SUBUNIT: Composed of three subunits: alpha (catalytic), beta and gamma.
INTERACTION: O75365:PTP4A3; NbExp=1; IntAct=EBI-1054481, EBI-1043866;
SUBCELLULAR LOCATION: Membrane; Single-pass type II membrane protein. Melanosome. Note=Identified by mass spectrometry in melanosome fractions from stage I to stage IV.
SIMILARITY: Belongs to the X(+)/potassium ATPases subunit beta family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D004997 Ethinyl Estradiol
  • D013749 Tetrachlorodibenzodioxin
  • C049325 1,2-dithiol-3-thione
  • C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl
  • C016403 2,4-dinitrotoluene
  • C023514 2,6-dinitrotoluene
  • C548651 2-(1'H-indolo-3'-carbonyl)thiazole-4-carboxylic acid methyl ester
  • C573693 2-(4-((4-(6-methoxy-3-pyridinyl)-5-(4-(trifluoromethoxy)phenyl)-2-thiazolyl)methoxy)-2-methylphenoxy)acetic acid
  • C030370 2-methoxy-5-(2',3',4'-trimethoxyphenyl)tropone
  • C009505 4,4'-diaminodiphenylmethane
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 101.73 RPKM in Skin - Not Sun Exposed (Suprapubic)
Total median expression: 2115.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -58.80159-0.370 Picture PostScript Text
3' UTR -185.70848-0.219 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000402 - ATPase_P-typ_cation-exchng_bsu

Pfam Domains:
PF00287 - Sodium / potassium ATPase beta chain

ModBase Predicted Comparative 3D Structure on P54709
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001671 ATPase activator activity
GO:0005391 sodium:potassium-exchanging ATPase activity
GO:0051117 ATPase binding

Biological Process:
GO:0006811 ion transport
GO:0006813 potassium ion transport
GO:0006814 sodium ion transport
GO:0006883 cellular sodium ion homeostasis
GO:0010107 potassium ion import
GO:0010248 establishment or maintenance of transmembrane electrochemical gradient
GO:0030001 metal ion transport
GO:0030007 cellular potassium ion homeostasis
GO:0032781 positive regulation of ATPase activity
GO:0036376 sodium ion export from cell
GO:0050821 protein stabilization
GO:0050900 leukocyte migration
GO:0072659 protein localization to plasma membrane
GO:0086009 membrane repolarization
GO:1901018 positive regulation of potassium ion transmembrane transporter activity
GO:1903278 positive regulation of sodium ion export from cell
GO:1903288 positive regulation of potassium ion import

Cellular Component:
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0005890 sodium:potassium-exchanging ATPase complex
GO:0005901 caveola
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0042470 melanosome
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LF384584 - JP 2014500723-A/192087: Polycomb-Associated Non-Coding RNAs.
AK131061 - Homo sapiens cDNA FLJ29027 fis, clone PRS09188, highly similar to Sodium/potassium-transporting ATPase beta-3 chain.
AK293697 - Homo sapiens cDNA FLJ50753 complete cds, highly similar to Sodium/potassium-transporting ATPase subunit beta-3.
BC001469 - Homo sapiens cDNA clone IMAGE:3138998, containing frame-shift errors.
BC011835 - Homo sapiens ATPase, Na+/K+ transporting, beta 3 polypeptide, mRNA (cDNA clone MGC:20152 IMAGE:3944210), complete cds.
U51478 - Human sodium/potassium-transporting ATPase beta-3 subunit mRNA, complete cds.
CU680074 - Synthetic construct Homo sapiens gateway clone IMAGE:100018709 5' read ATP1B3 mRNA.
KJ890730 - Synthetic construct Homo sapiens clone ccsbBroadEn_00124 ATP1B3 gene, encodes complete protein.
LF378186 - JP 2014500723-A/185689: Polycomb-Associated Non-Coding RNAs.
JD020384 - Sequence 1408 from Patent EP1572962.
JD028481 - Sequence 9505 from Patent EP1572962.
JD019578 - Sequence 602 from Patent EP1572962.
LF378184 - JP 2014500723-A/185687: Polycomb-Associated Non-Coding RNAs.
AY946018 - Homo sapiens Na+/K+ transporting ATPase beta 3 polypeptide (ATP1B3) mRNA, partial cds.
JD035877 - Sequence 16901 from Patent EP1572962.
LF378183 - JP 2014500723-A/185686: Polycomb-Associated Non-Coding RNAs.
LF378182 - JP 2014500723-A/185685: Polycomb-Associated Non-Coding RNAs.
JD025515 - Sequence 6539 from Patent EP1572962.
AK094673 - Homo sapiens cDNA FLJ37354 fis, clone BRAMY2022929.
LF378179 - JP 2014500723-A/185682: Polycomb-Associated Non-Coding RNAs.
LF378178 - JP 2014500723-A/185681: Polycomb-Associated Non-Coding RNAs.
JD317028 - Sequence 298052 from Patent EP1572962.
JD251728 - Sequence 232752 from Patent EP1572962.
LF378177 - JP 2014500723-A/185680: Polycomb-Associated Non-Coding RNAs.
JD195191 - Sequence 176215 from Patent EP1572962.
LF378176 - JP 2014500723-A/185679: Polycomb-Associated Non-Coding RNAs.
JD369318 - Sequence 350342 from Patent EP1572962.
JD203346 - Sequence 184370 from Patent EP1572962.
JD357794 - Sequence 338818 from Patent EP1572962.
JD154596 - Sequence 135620 from Patent EP1572962.
LF378175 - JP 2014500723-A/185678: Polycomb-Associated Non-Coding RNAs.
JD509563 - Sequence 490587 from Patent EP1572962.
JD061575 - Sequence 42599 from Patent EP1572962.
LF378174 - JP 2014500723-A/185677: Polycomb-Associated Non-Coding RNAs.
JD347701 - Sequence 328725 from Patent EP1572962.
JD559860 - Sequence 540884 from Patent EP1572962.
LF378173 - JP 2014500723-A/185676: Polycomb-Associated Non-Coding RNAs.
MA620161 - JP 2018138019-A/192087: Polycomb-Associated Non-Coding RNAs.
MA613763 - JP 2018138019-A/185689: Polycomb-Associated Non-Coding RNAs.
MA613761 - JP 2018138019-A/185687: Polycomb-Associated Non-Coding RNAs.
MA613760 - JP 2018138019-A/185686: Polycomb-Associated Non-Coding RNAs.
MA613759 - JP 2018138019-A/185685: Polycomb-Associated Non-Coding RNAs.
MA613756 - JP 2018138019-A/185682: Polycomb-Associated Non-Coding RNAs.
MA613755 - JP 2018138019-A/185681: Polycomb-Associated Non-Coding RNAs.
MA613754 - JP 2018138019-A/185680: Polycomb-Associated Non-Coding RNAs.
MA613753 - JP 2018138019-A/185679: Polycomb-Associated Non-Coding RNAs.
MA613752 - JP 2018138019-A/185678: Polycomb-Associated Non-Coding RNAs.
MA613751 - JP 2018138019-A/185677: Polycomb-Associated Non-Coding RNAs.
MA613750 - JP 2018138019-A/185676: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P54709 (Reactome details) participates in the following event(s):

R-HSA-375133 Basigin binds Mannose-carrying cell recognition molecules
R-HSA-936897 ATP1A:ATP1B:FXYD exchanges Na+ for K+
R-HSA-210991 Basigin interactions
R-HSA-202733 Cell surface interactions at the vascular wall
R-HSA-936837 Ion transport by P-type ATPases
R-HSA-5578775 Ion homeostasis
R-HSA-109582 Hemostasis
R-HSA-983712 Ion channel transport
R-HSA-5576891 Cardiac conduction
R-HSA-382551 Transport of small molecules
R-HSA-397014 Muscle contraction

-  Other Names for This Gene
  Alternate Gene Symbols: AT1B3_HUMAN, B7Z1N7, ENST00000286371.1, ENST00000286371.2, ENST00000286371.3, ENST00000286371.4, ENST00000286371.5, ENST00000286371.6, ENST00000286371.7, NM_001679, P54709, uc317kjw.1, uc317kjw.2
UCSC ID: ENST00000286371.8_4
RefSeq Accession: NM_001679.4
Protein: P54709 (aka AT1B3_HUMAN or ATND_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.