Human Gene ATP5PO (ENST00000290299.7_7) from GENCODE V47lift37
  Description: ATP synthase peripheral stalk subunit OSCP (from RefSeq NM_001697.3)
Gencode Transcript: ENST00000290299.7_7
Gencode Gene: ENSG00000241837.7_11
Transcript (Including UTRs)
   Position: hg19 chr21:35,275,757-35,288,108 Size: 12,352 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr21:35,275,830-35,288,067 Size: 12,238 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr21:35,275,757-35,288,108)mRNA (may differ from genome)Protein (213 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
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PubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ATPO_HUMAN
DESCRIPTION: RecName: Full=ATP synthase subunit O, mitochondrial; AltName: Full=Oligomycin sensitivity conferral protein; Short=OSCP; Flags: Precursor;
FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.
SUBUNIT: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c. Component of an ATP synthase complex composed of ATP5F1, ATP5G1, ATP5E, ATP5H, ATP5I, ATP5J, ATP5J2, MT-ATP6, MT-ATP8, ATP5A1, ATP5B, ATP5D, ATP5C1, ATP5O, ATP5L, USMG5 and MP68 (By similarity).
SUBCELLULAR LOCATION: Mitochondrion (By similarity). Mitochondrion inner membrane (By similarity).
SIMILARITY: Belongs to the ATPase delta chain family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 114.71 RPKM in Heart - Left Ventricle
Total median expression: 1997.92 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.6041-0.307 Picture PostScript Text
3' UTR -11.2073-0.153 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000711 - ATPase_F1-cplx_OSCP/dsu
IPR020781 - ATPase_F1-cplx_OSCP/dsu_CS
IPR026015 - ATPase_OSCP/delta_N

Pfam Domains:
PF00213 - ATP synthase delta (OSCP) subunit

SCOP Domains:
47928 - N-terminal domain of the delta subunit of the F1F0-ATP synthase

ModBase Predicted Comparative 3D Structure on P48047
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005215 transporter activity
GO:0005515 protein binding
GO:0008144 drug binding
GO:0016887 ATPase activity
GO:0022857 transmembrane transporter activity
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism

Biological Process:
GO:0006754 ATP biosynthetic process
GO:0006811 ion transport
GO:0015986 ATP synthesis coupled proton transport
GO:0042407 cristae formation
GO:0042776 mitochondrial ATP synthesis coupled proton transport
GO:0099132 ATP hydrolysis coupled cation transmembrane transport
GO:1902600 hydrogen ion transmembrane transport

Cellular Component:
GO:0005634 nucleus
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005753 mitochondrial proton-transporting ATP synthase complex
GO:0005886 plasma membrane
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  DQ656064 - Homo sapiens clone Affy2B11-13, mRNA sequence.
DQ656065 - Homo sapiens clone Affy22B11-6, mRNA sequence.
AF088071 - Homo sapiens full length insert cDNA clone ZD90F06.
X83218 - H.sapiens mRNA for ATP synthase.
AK222608 - Homo sapiens mRNA for mitochondrial ATP synthase, O subunit precursor variant, clone: CAS08612.
AK093795 - Homo sapiens cDNA FLJ36476 fis, clone THYMU2017085.
AK124187 - Homo sapiens cDNA FLJ42193 fis, clone THYMU2033263, moderately similar to ATP SYNTHASE OLIGOMYCIN SENSITIVITY CONFERRAL PROTEIN PRECURSOR, MITOCHONDRIAL (EC 3.6.1.34).
BC021233 - Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit, mRNA (cDNA clone MGC:15300 IMAGE:4126036), complete cds.
AK222962 - Homo sapiens mRNA for mitochondrial ATP synthase, O subunit precursor variant, clone: HRT01951.
BC022865 - Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit, mRNA (cDNA clone MGC:23734 IMAGE:4103001), complete cds.
S77356 - Homo sapiens oligomycin sensitivity conferral protein oscp-like protein mRNA, partial cds.
CR456822 - Homo sapiens full open reading frame cDNA clone RZPDo834G0215D for gene ATP5O, ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (oligomycin sensitivity conferring protein); complete cds, incl. stopcodon.
AK311796 - Homo sapiens cDNA, FLJ92057, Homo sapiens ATP synthase, H+ transporting, mitochondrial F1complex, O subunit (oligomycin sensitivity conferring protein)(ATP5O), mRNA.
BT019836 - Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (oligomycin sensitivity conferring protein) mRNA, complete cds.
JF432864 - Synthetic construct Homo sapiens clone IMAGE:100074186 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (ATP5O) gene, encodes complete protein.
KJ901028 - Synthetic construct Homo sapiens clone ccsbBroadEn_10422 ATP5O gene, encodes complete protein.
X83219 - H.sapiens ATP synthase gene homologue (trapped exon, HMC08D05).
DQ600433 - Homo sapiens piRNA piR-38499, complete sequence.
DQ656021 - Homo sapiens clone Affy08250A07, mRNA sequence.
DQ656022 - Homo sapiens clone Affy08250C07, mRNA sequence.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-7980 - ATP biosynthesis

Reactome (by CSHL, EBI, and GO)

Protein P48047 (Reactome details) participates in the following event(s):

R-HSA-164840 ADP and Pi bind to ATPase
R-HSA-8949580 F1Fo ATP synthase dimerizes
R-HSA-164834 Enzyme-bound ATP is released
R-HSA-164832 ATPase synthesizes ATP
R-HSA-163210 Formation of ATP by chemiosmotic coupling
R-HSA-8949613 Cristae formation
R-HSA-163200 Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.
R-HSA-1592230 Mitochondrial biogenesis
R-HSA-1428517 The citric acid (TCA) cycle and respiratory electron transport
R-HSA-1852241 Organelle biogenesis and maintenance
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ATP5O, ATP5PO , ATPO, ATPO_HUMAN, B2R4E2, ENST00000290299.1, ENST00000290299.2, ENST00000290299.3, ENST00000290299.4, ENST00000290299.5, ENST00000290299.6, NM_001697, P48047, Q5U042, Q6IBI2, uc317kuk.1, uc317kuk.2
UCSC ID: ENST00000290299.7_7
RefSeq Accession: NM_001697.3
Protein: P48047 (aka ATPO_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.