Human Gene ATXN7L2 (ENST00000369869.1_1) from GENCODE V47lift37
  Description: ataxin 7 like 2 (from HGNC ATXN7L2)
Gencode Transcript: ENST00000369869.1_1
Gencode Gene: ENSG00000162650.17_9
Transcript (Including UTRs)
   Position: hg19 chr1:110,032,173-110,035,426 Size: 3,254 Total Exon Count: 4 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:110,032,173-110,035,426)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerHGNCPubMedWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.33 RPKM in Brain - Cerebellum
Total median expression: 196.89 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF206303 - JP 2014500723-A/13806: Polycomb-Associated Non-Coding RNAs.
BC036849 - Homo sapiens ataxin 7-like 2, mRNA (cDNA clone MGC:46565 IMAGE:5248803), complete cds.
AK090460 - Homo sapiens mRNA for FLJ00381 protein.
BC037582 - Homo sapiens ataxin 7-like 2, mRNA (cDNA clone IMAGE:5242570), with apparent retained intron.
JD403354 - Sequence 384378 from Patent EP1572962.
JD227946 - Sequence 208970 from Patent EP1572962.
JD497864 - Sequence 478888 from Patent EP1572962.
JD371929 - Sequence 352953 from Patent EP1572962.
JD050997 - Sequence 32021 from Patent EP1572962.
JD094977 - Sequence 76001 from Patent EP1572962.
JD193313 - Sequence 174337 from Patent EP1572962.
JD398437 - Sequence 379461 from Patent EP1572962.
JD253957 - Sequence 234981 from Patent EP1572962.
JD332146 - Sequence 313170 from Patent EP1572962.
LF353070 - JP 2014500723-A/160573: Polycomb-Associated Non-Coding RNAs.
MA441880 - JP 2018138019-A/13806: Polycomb-Associated Non-Coding RNAs.
MA588647 - JP 2018138019-A/160573: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: BC037582, uc318hxp.1
UCSC ID: ENST00000369869.1_1
RefSeq Accession: NM_153340.5

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.