Human Gene BAG6 (ENST00000676615.2_5) from GENCODE V47lift37
  Description: BAG cochaperone 6, transcript variant 60 (from RefSeq NM_001388020.1)
Gencode Transcript: ENST00000676615.2_5
Gencode Gene: ENSG00000204463.14_17
Transcript (Including UTRs)
   Position: hg19 chr6:31,606,805-31,620,438 Size: 13,634 Total Exon Count: 26 Strand: -
Coding Region
   Position: hg19 chr6:31,606,908-31,619,540 Size: 12,633 Coding Exon Count: 25 

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Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:31,606,805-31,620,438)mRNA (may differ from genome)Protein (1162 aa)
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-  Comments and Description Text from UniProtKB
  ID: BAG6_HUMAN
DESCRIPTION: RecName: Full=Large proline-rich protein BAG6; AltName: Full=BAG family molecular chaperone regulator 6; AltName: Full=BCL2-associated athanogene 6; Short=BAG-6; Short=BAG6; AltName: Full=HLA-B-associated transcript 3; AltName: Full=Protein G3; AltName: Full=Protein Scythe;
FUNCTION: Chaperone that plays a key role in various processes such as apoptosis, insertion of tail-anchored (TA) membrane proteins to the endoplasmic reticulum membrane and regulation of chromatin. Acts in part by regulating stability of proteins and their degradation by the proteasome. Participates in endoplasmic reticulum stress-induced apoptosis via its interaction with AIFM1/AIF by regulating AIFM1/AIF stability and preventing its degradation. Also required during spermatogenesis for synaptonemal complex assembly via its interaction with HSPA2, by inhibiting polyubiquitination and subsequent proteasomal degradation of HSPA2. Required for selective ubiquitin-mediated degradation of defective nascent chain polypeptides by the proteasome. In this context, may play a role in immuno-proteasomes to generate antigenic peptides via targeted degradation, thereby playing a role in antigen presentation in immune response. Key component of the BAG6/BAT3 complex, a cytosolic multiprotein complex involved in the post-translational delivery of tail-anchored (TA) membrane proteins to the endoplasmic reticulum membrane. TA membrane proteins, also named type II transmembrane proteins, contain a single C-terminal transmembrane region. BAG6/BAT3 acts by facilitating TA membrane proteins capture by ASNA1/TRC40: it is recruited to ribosomes synthesizing membrane proteins, interacts with the transmembrane region of newly released TA proteins and transfers them to ASNA1/TRC40 for targeting to the endoplasmic reticulum membrane.
FUNCTION: Involved in DNA damage-induced apoptosis: following DNA damage, accumulates in the nucleus and forms a complex with p300/EP300, enhancing p300/EP300-mediated p53/TP53 acetylation leading to increase p53/TP53 transcriptional activity. When nuclear, may also act as a component of some chromatin regulator complex that regulates histone 3 'Lys-4' dimethylation (H3K4me2).
FUNCTION: Can be released from tumor and dendritic cells in membrane vesicles or exosomes, and engage NCR3 thereby promoting natural killer cell (NK) activation and cytotoxicity.
SUBUNIT: Component of the BAT3 complex, at least composed of BAG6/BAT3, UBL4A and GET3/TRC35. Interacts with AIFM1, CTCFL, HSPA2 and p300/EP300. Interacts with ricin A chain. Interacts with L.pneumophila proteins Lpg2160 and LegU1. Interacts with NCR3.
INTERACTION: Q7Z434:MAVS; NbExp=2; IntAct=EBI-347552, EBI-995373;
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Nucleus. Note=The C- terminal fragment generated by caspase-3 is cytoplasmic. Also found in extracellular vesicular exosomes in some tumor cells.
PTM: Cleavage by caspase-3 releases a C-terminal peptide that plays a role in ricin-induced apoptosis.
PTM: In case of infection by L.pneumophila, ubiquitinated by the SCF(LegU1) complex.
SIMILARITY: Contains 1 ubiquitin-like domain.
SEQUENCE CAUTION: Sequence=AAD18085.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=BAB63390.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAI18318.2; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BAG6
Diseases sorted by gene-association score: acute diarrhea (11), discrete subaortic stenosis (9), primary amebic meningoencephalitis (9), subvalvular aortic stenosis (7), non-invasive bladder papillary urothelial neoplasm (6), gastroenteritis (5), coronary artery aneurysm (4), fructose-1,6-bisphosphatase deficiency (4), gastrointestinal system disease (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -104.80251-0.418 Picture PostScript Text
3' UTR -19.60103-0.190 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR021925 - DUF3538
IPR000626 - Ubiquitin
IPR019954 - Ubiquitin_CS
IPR019955 - Ubiquitin_supergroup

Pfam Domains:
PF00240 - Ubiquitin family
PF12057 - BCL2-associated athanogene 6
PF13881 - Ubiquitin-2 like Rad60 SUMO-like

SCOP Domains:
101447 - Formin homology 2 domain (FH2 domain)
54236 - Ubiquitin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1WX9 - NMR MuPIT 4DWF - X-ray MuPIT 4EEW - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P46379
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0030544 Hsp70 protein binding
GO:0031593 polyubiquitin binding
GO:0031625 ubiquitin protein ligase binding
GO:0042802 identical protein binding
GO:0043022 ribosome binding
GO:0051787 misfolded protein binding
GO:0070628 proteasome binding
GO:1990381 ubiquitin-specific protease binding

Biological Process:
GO:0001822 kidney development
GO:0002376 immune system process
GO:0002429 immune response-activating cell surface receptor signaling pathway
GO:0006325 chromatin organization
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0006915 apoptotic process
GO:0007130 synaptonemal complex assembly
GO:0007283 spermatogenesis
GO:0007420 brain development
GO:0009790 embryo development
GO:0010498 proteasomal protein catabolic process
GO:0018393 internal peptidyl-lysine acetylation
GO:0030101 natural killer cell activation
GO:0030154 cell differentiation
GO:0030324 lung development
GO:0030433 ER-associated ubiquitin-dependent protein catabolic process
GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042127 regulation of cell proliferation
GO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0042981 regulation of apoptotic process
GO:0043066 negative regulation of apoptotic process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045861 negative regulation of proteolysis
GO:0050821 protein stabilization
GO:0070059 intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress
GO:0071712 ER-associated misfolded protein catabolic process
GO:0071816 tail-anchored membrane protein insertion into ER membrane
GO:1904294 positive regulation of ERAD pathway
GO:1904378 maintenance of unfolded protein involved in ERAD pathway
GO:1904379 protein localization to cytosolic proteasome complex involved in ERAD pathway

Cellular Component:
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane
GO:0043231 intracellular membrane-bounded organelle
GO:0070062 extracellular exosome
GO:0071818 BAT3 complex


-  Descriptions from all associated GenBank mRNAs
  AK302695 - Homo sapiens cDNA FLJ60983 complete cds, highly similar to Large proline-rich protein BAT3.
BX647244 - Homo sapiens mRNA; cDNA DKFZp686L0653 (from clone DKFZp686L0653).
BC003133 - Homo sapiens HLA-B associated transcript 3, mRNA (cDNA clone MGC:3619 IMAGE:2957896), complete cds.
M33519 - Human HLA-B-associated transcript 3 (BAT3) mRNA, complete cds.
AK304879 - Homo sapiens cDNA FLJ61584 complete cds, highly similar to Large proline-rich protein BAT3.
KJ892447 - Synthetic construct Homo sapiens clone ccsbBroadEn_01841 BAG6 gene, encodes complete protein.
AB384971 - Synthetic construct DNA, clone: pF1KB4636, Homo sapiens BAT3 gene for large proline-rich protein BAT3, complete cds, without stop codon, in Flexi system.
JD027150 - Sequence 8174 from Patent EP1572962.
DQ591812 - Homo sapiens piRNA piR-58924, complete sequence.
CU678390 - Synthetic construct Homo sapiens gateway clone IMAGE:100020517 5' read BAT3 mRNA.
JD056311 - Sequence 37335 from Patent EP1572962.
JD037183 - Sequence 18207 from Patent EP1572962.
JD313501 - Sequence 294525 from Patent EP1572962.
JD394945 - Sequence 375969 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A2ADJ7, A3KQ42, A3KQ44, A6NGY6, A6PWF7, B0UX84, B4DZ12, B4E3V4, BAG6 , BAG6_HUMAN, BAT3 , E7EMZ4, ENST00000676615.1, F8VXY4, G3, NM_001388020, O95874, P46379, Q5HYL9, Q5SQ35, Q5SQ36, Q5SQ37, Q5SQ41, Q5SRP8, Q5SRP9, Q5STC1, Q5STX1, Q5STX3, Q96SA6, Q9BCN4, uc330bkl.1, uc330bkl.2
UCSC ID: ENST00000676615.2_5
RefSeq Accession: NM_001387994.1
Protein: P46379 (aka BAG6_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.