Human Gene ADGRB1 (ENST00000517894.6_12) from GENCODE V47lift37
  Description: adhesion G protein-coupled receptor B1, transcript variant 1 (from RefSeq NM_001702.3)
Gencode Transcript: ENST00000517894.6_12
Gencode Gene: ENSG00000181790.13_15
Transcript (Including UTRs)
   Position: hg19 chr8:143,531,010-143,626,368 Size: 95,359 Total Exon Count: 31 Strand: +
Coding Region
   Position: hg19 chr8:143,545,560-143,625,778 Size: 80,219 Coding Exon Count: 30 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:143,531,010-143,626,368)mRNA (may differ from genome)Protein (1584 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMalacards
MGIOMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: BAI1_HUMAN
DESCRIPTION: RecName: Full=Brain-specific angiogenesis inhibitor 1; Flags: Precursor;
FUNCTION: Phosphatidylserine receptor that enhances the engulfment of apoptotic cells. Likely to be a potent inhibitor of angiogenesis in brain and may play a significant role as a mediator of the p53 signal in suppression of glioblastoma. May function in cell adhesion and signal transduction in the brain.
SUBUNIT: Interacts with ELMO1 and DOCK1. When bound to ELMO1 and DOCK1, it may act as a module to promote the engulfment (By similarity). Interacts with MAGI1, MAGI3, BAIAP2 and PHYHIP.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein. Note=Likely to be concentrated at cell-cell adhesion sites.
TISSUE SPECIFICITY: Specifically expressed in brain. Reduced or no expression is observed in some glioblastoma cell lines and cancer tissues. No expression in astrocytes.
INDUCTION: By p53/TP53.
DOMAIN: The TSP1 repeats inhibit in vivo angiogenesis in rat cornea induced by BFGF.
PTM: The endogenous protein is proteolytically cleaved into 2 subunits, an extracellular subunit and a seven-transmembrane subunit.
SIMILARITY: Belongs to the G-protein coupled receptor 2 family. LN-TM7 subfamily.
SIMILARITY: Contains 1 GPS domain.
SIMILARITY: Contains 5 TSP type-1 domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ADGRB1
Diseases sorted by gene-association score: glioblastoma (8)

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 34.44 RPKM in Brain - Cortex
Total median expression: 274.70 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -407.30675-0.603 Picture PostScript Text
3' UTR -284.60590-0.482 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR022624 - DUF3497
IPR017981 - GPCR_2-like
IPR008077 - GPCR_2_brain-spec_angio_inhib
IPR001879 - GPCR_2_extracellular_dom
IPR000832 - GPCR_2_secretin-like
IPR000203 - GPS_dom
IPR000884 - Thrombospondin_1_rpt

Pfam Domains:
PF00002 - 7 transmembrane receptor (Secretin family)
PF00090 - Thrombospondin type 1 domain
PF01825 - GPCR proteolysis site, GPS, motif
PF02793 - Hormone receptor domain
PF16489 - GPCR-Autoproteolysis INducing (GAIN) domain
PF19188 - Adhesion GPCR B N-terminal region

SCOP Domains:
81321 - Family A G protein-coupled receptor-like
82895 - TSP-1 type 1 repeat
111418 - Hormone receptor domain

ModBase Predicted Comparative 3D Structure on O14514
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001530 lipopolysaccharide binding
GO:0001786 phosphatidylserine binding
GO:0004871 signal transducer activity
GO:0004888 transmembrane signaling receptor activity
GO:0004930 G-protein coupled receptor activity
GO:0005515 protein binding
GO:0030165 PDZ domain binding

Biological Process:
GO:0002376 immune system process
GO:0006909 phagocytosis
GO:0006910 phagocytosis, recognition
GO:0006911 phagocytosis, engulfment
GO:0007155 cell adhesion
GO:0007165 signal transduction
GO:0007166 cell surface receptor signaling pathway
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007399 nervous system development
GO:0007409 axonogenesis
GO:0007422 peripheral nervous system development
GO:0007517 muscle organ development
GO:0008285 negative regulation of cell proliferation
GO:0010596 negative regulation of endothelial cell migration
GO:0016525 negative regulation of angiogenesis
GO:0031397 negative regulation of protein ubiquitination
GO:0042177 negative regulation of protein catabolic process
GO:0043277 apoptotic cell clearance
GO:0043652 engulfment of apoptotic cell
GO:0045087 innate immune response
GO:0048167 regulation of synaptic plasticity
GO:0050829 defense response to Gram-negative bacterium
GO:0051965 positive regulation of synapse assembly
GO:1901741 positive regulation of myoblast fusion
GO:1903428 positive regulation of reactive oxygen species biosynthetic process

Cellular Component:
GO:0001891 phagocytic cup
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0005911 cell-cell junction
GO:0005925 focal adhesion
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030054 cell junction
GO:0030425 dendrite
GO:0042995 cell projection
GO:0043197 dendritic spine
GO:0045202 synapse
GO:0045211 postsynaptic membrane
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AB005297 - Homo sapiens BAI 1 mRNA, complete cds.
JD415681 - Sequence 396705 from Patent EP1572962.
JD124441 - Sequence 105465 from Patent EP1572962.
JD123350 - Sequence 104374 from Patent EP1572962.
JD191246 - Sequence 172270 from Patent EP1572962.
BC156200 - Synthetic construct Homo sapiens clone IMAGE:100061551, MGC:190023 brain-specific angiogenesis inhibitor 1 (BAI1) mRNA, encodes complete protein.
AK123982 - Homo sapiens cDNA FLJ41988 fis, clone SPLEN2015674, highly similar to Homo sapiens BAI 1 mRNA.
JD191865 - Sequence 172889 from Patent EP1572962.
JD109175 - Sequence 90199 from Patent EP1572962.
JD309675 - Sequence 290699 from Patent EP1572962.
JD114823 - Sequence 95847 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ADGRB1 , AGRB1_HUMAN, BAI1 , ENST00000517894.1, ENST00000517894.2, ENST00000517894.3, ENST00000517894.4, ENST00000517894.5, NM_001702, O14514, uc323qdc.1, uc323qdc.2
UCSC ID: ENST00000517894.6_12
RefSeq Accession: NM_001702.3
Protein: O14514 (aka BAI1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.