Human Gene BCL3 (ENST00000164227.10_6) from GENCODE V47lift37
  Description: BCL3 transcription coactivator (from RefSeq NM_005178.5)
Gencode Transcript: ENST00000164227.10_6
Gencode Gene: ENSG00000069399.15_16
Transcript (Including UTRs)
   Position: hg19 chr19:45,251,965-45,263,301 Size: 11,337 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr19:45,252,048-45,262,872 Size: 10,825 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:45,251,965-45,263,301)mRNA (may differ from genome)Protein (454 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: BCL3_HUMAN
DESCRIPTION: RecName: Full=B-cell lymphoma 3 protein; Short=BCL-3; AltName: Full=Proto-oncogene BCL3;
FUNCTION: Contributes to the regulation of transcriptional activation of NF-kappa-B target genes. In the cytoplasm, inhibits the nuclear translocation of the NF-kappa-B p50 subunit. In the nucleus, acts as transcriptional activator that promotes transcription of NF-kappa-B target genes. Contributes to the regulation of cell proliferation (By similarity).
SUBUNIT: Component of a complex consisting of the NF-kappa-B p52- p52 homodimer and BCL3. Component of a complex consisting of the NF-kappa-B p50-p50 homodimer and BCL3. Interacts with N4BP2, COPS5 and PIR. Interacts with CYLD (By similarity).
INTERACTION: O95999:BCL10; NbExp=3; IntAct=EBI-958997, EBI-958922; P56545:CTBP2; NbExp=2; IntAct=EBI-958997, EBI-741533;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm (By similarity). Cytoplasm, perinuclear region (By similarity). Note=Ubiquitination via 'Lys-63'-linked ubiquitin chains is required for nuclear accumulation (By similarity).
PTM: Polyubiquitinated. Ubiquitination via 'Lys-63'-linked ubiquitin chains is required for nuclear accumulation. Deubiquitinated by CYLD, which acts on 'Lys-63'-linked ubiquitin chains. Deubiquitination by CYLD prevents nuclear accumulation (By similarity).
PTM: Activated by phosphorylation.
DISEASE: Note=A chromosomal aberration involving BCL3 may be a cause of B-cell chronic lymphocytic leukemia (B-CLL). Translocation t(14;19)(q32;q13.1) with immunoglobulin gene regions.
SIMILARITY: Contains 7 ANK repeats.
CAUTION: It is uncertain whether Met-1 or Met-9 is the initiator.
SEQUENCE CAUTION: Sequence=AAA51815.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAA51816.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAH64993.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BCL3
Diseases sorted by gene-association score: lymphoma (18), chronic lymphocytic leukemia (10), b-cell lymphomas (5), lymphoma, non-hodgkin (3), nasopharyngeal carcinoma (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 52.38 RPKM in Whole Blood
Total median expression: 836.22 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -39.3083-0.473 Picture PostScript Text
3' UTR -147.10429-0.343 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom

Pfam Domains:
PF00023 - Ankyrin repeat
PF12796 - Ankyrin repeats (3 copies)
PF13606 - Ankyrin repeat
PF13637 - Ankyrin repeats (many copies)

SCOP Domains:
140860 - Pseudo ankyrin repeat-like
48403 - Ankyrin repeat

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1K1A - X-ray MuPIT 1K1B - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P20749
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0008134 transcription factor binding
GO:0030674 protein binding, bridging

Biological Process:
GO:0000060 protein import into nucleus, translocation
GO:0002268 follicular dendritic cell differentiation
GO:0002315 marginal zone B cell differentiation
GO:0002455 humoral immune response mediated by circulating immunoglobulin
GO:0002467 germinal center formation
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006974 cellular response to DNA damage stimulus
GO:0007249 I-kappaB kinase/NF-kappaB signaling
GO:0009615 response to virus
GO:0010225 response to UV-C
GO:0019730 antimicrobial humoral response
GO:0030198 extracellular matrix organization
GO:0030330 DNA damage response, signal transduction by p53 class mediator
GO:0032729 positive regulation of interferon-gamma production
GO:0042088 T-helper 1 type immune response
GO:0042536 negative regulation of tumor necrosis factor biosynthetic process
GO:0042742 defense response to bacterium
GO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0042832 defense response to protozoan
GO:0042981 regulation of apoptotic process
GO:0043066 negative regulation of apoptotic process
GO:0045064 T-helper 2 cell differentiation
GO:0045082 positive regulation of interleukin-10 biosynthetic process
GO:0045415 negative regulation of interleukin-8 biosynthetic process
GO:0045727 positive regulation of translation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046426 negative regulation of JAK-STAT cascade
GO:0048536 spleen development
GO:0051101 regulation of DNA binding
GO:0051457 maintenance of protein location in nucleus
GO:1901222 regulation of NIK/NF-kappaB signaling

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0030496 midbody
GO:0032991 macromolecular complex
GO:0032996 Bcl3-Bcl10 complex
GO:0033257 Bcl3/NF-kappaB2 complex
GO:0043231 intracellular membrane-bounded organelle
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK296180 - Homo sapiens cDNA FLJ51484 complete cds, highly similar to B-cell lymphoma 3-encoded protein.
BC064993 - Homo sapiens B-cell CLL/lymphoma 3, mRNA (cDNA clone MGC:71163 IMAGE:5806689), complete cds.
M31732 - Human B-cell lymphoma 3-encoded protein (bcl-3) mRNA, complete cds.
AK309453 - Homo sapiens cDNA, FLJ99494.
JD389196 - Sequence 370220 from Patent EP1572962.
JD118622 - Sequence 99646 from Patent EP1572962.
JD102626 - Sequence 83650 from Patent EP1572962.
JD339325 - Sequence 320349 from Patent EP1572962.
JD364916 - Sequence 345940 from Patent EP1572962.
JD385020 - Sequence 366044 from Patent EP1572962.
JD520503 - Sequence 501527 from Patent EP1572962.
JD297512 - Sequence 278536 from Patent EP1572962.
JD554392 - Sequence 535416 from Patent EP1572962.
JD226522 - Sequence 207546 from Patent EP1572962.
JD222509 - Sequence 203533 from Patent EP1572962.
JD203213 - Sequence 184237 from Patent EP1572962.
JD126917 - Sequence 107941 from Patent EP1572962.
JD369269 - Sequence 350293 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BCL3_HUMAN, BCL4, D19S37, ENST00000164227.1, ENST00000164227.2, ENST00000164227.3, ENST00000164227.4, ENST00000164227.5, ENST00000164227.6, ENST00000164227.7, ENST00000164227.8, ENST00000164227.9, NM_005178, P20749, uc317ccz.1, uc317ccz.2
UCSC ID: ENST00000164227.10_6
RefSeq Accession: NM_005178.5
Protein: P20749 (aka BCL3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.