Human Gene BCLAF1 (ENST00000531224.6_13) from GENCODE V47lift37
  Description: BCL2 associated transcription factor 1, transcript variant 18 (from RefSeq NR_170164.1)
Gencode Transcript: ENST00000531224.6_13
Gencode Gene: ENSG00000029363.17_19
Transcript (Including UTRs)
   Position: hg19 chr6:136,577,765-136,610,984 Size: 33,220 Total Exon Count: 13 Strand: -
Coding Region
   Position: hg19 chr6:136,582,248-136,601,004 Size: 18,757 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:136,577,765-136,610,984)mRNA (may differ from genome)Protein (920 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsHGNC
MalacardsMGIPubMedUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: BCLF1_HUMAN
DESCRIPTION: RecName: Full=Bcl-2-associated transcription factor 1; Short=Btf;
FUNCTION: Death-promoting transcriptional repressor.
SUBUNIT: Interacts with Bcl-2 related proteins, EMD, with the adenovirus E1B 19 kDa protein and with DNA.
INTERACTION: P50402:EMD; NbExp=3; IntAct=EBI-437804, EBI-489887;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus.
TISSUE SPECIFICITY: Ubiquitous.
SEQUENCE CAUTION: Sequence=AAH47687.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAH47887.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAH56894.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAH63846.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=BAA11481.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BCLAF1
Diseases sorted by gene-association score: giant axonal neuropathy (7), emery-dreifuss muscular dystrophy (7), superficial mycosis (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D001564 Benzo(a)pyrene
  • D004997 Ethinyl Estradiol
  • D013749 Tetrachlorodibenzodioxin
  • C049325 1,2-dithiol-3-thione
  • C495626 14-deoxy-11,12-didehydroandrographolide
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • C012606 4-vinyl-1-cyclohexene dioxide
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D000082 Acetaminophen
  • D016604 Aflatoxin B1
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 31.94 RPKM in Ovary
Total median expression: 945.63 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -62.40248-0.252 Picture PostScript Text
3' UTR -1012.504483-0.226 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026668 - Bcl-2_assoc_TF1

Pfam Domains:
PF15440 - THRAP3/BCLAF1 family

ModBase Predicted Comparative 3D Structure on Q9NYF8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0005515 protein binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006915 apoptotic process
GO:0043065 positive regulation of apoptotic process
GO:0043620 regulation of DNA-templated transcription in response to stress
GO:0045892 negative regulation of transcription, DNA-templated
GO:1990830 cellular response to leukemia inhibitory factor
GO:2000144 positive regulation of DNA-templated transcription, initiation
GO:2001022 positive regulation of response to DNA damage stimulus
GO:2001244 positive regulation of intrinsic apoptotic signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0016607 nuclear speck


-  Descriptions from all associated GenBank mRNAs
  BX537576 - Homo sapiens mRNA; cDNA DKFZp686K24119 (from clone DKFZp686K24119).
D79986 - Homo sapiens KIAA0164 mRNA.
FW340045 - Screening.
LP895564 - Sequence 428 from Patent EP3253886.
BX648431 - Homo sapiens mRNA; cDNA DKFZp686G15253 (from clone DKFZp686G15253).
BX648878 - Homo sapiens mRNA; cDNA DKFZp686E18243 (from clone DKFZp686E18243).
JD318342 - Sequence 299366 from Patent EP1572962.
JD147340 - Sequence 128364 from Patent EP1572962.
JD235201 - Sequence 216225 from Patent EP1572962.
BX649160 - Homo sapiens mRNA; cDNA DKFZp686I0829 (from clone DKFZp686I0829).
JD147186 - Sequence 128210 from Patent EP1572962.
JD099363 - Sequence 80387 from Patent EP1572962.
BC132780 - Homo sapiens BCL2-associated transcription factor 1, mRNA (cDNA clone MGC:164411 IMAGE:40146802), complete cds.
BC144281 - Homo sapiens BCL2-associated transcription factor 1, mRNA (cDNA clone MGC:177818 IMAGE:9052801), complete cds.
BC144299 - Homo sapiens cDNA clone IMAGE:9052819.
BC144282 - Homo sapiens cDNA clone IMAGE:9052802, with apparent retained intron.
JD429809 - Sequence 410833 from Patent EP1572962.
JD553826 - Sequence 534850 from Patent EP1572962.
JD562475 - Sequence 543499 from Patent EP1572962.
JD301508 - Sequence 282532 from Patent EP1572962.
JD052201 - Sequence 33225 from Patent EP1572962.
JD223964 - Sequence 204988 from Patent EP1572962.
JD280167 - Sequence 261191 from Patent EP1572962.
JD327931 - Sequence 308955 from Patent EP1572962.
JD327930 - Sequence 308954 from Patent EP1572962.
AK315884 - Homo sapiens cDNA, FLJ79533 complete cds, highly similar to Bcl-2-associated transcription factor 1.
AK303559 - Homo sapiens cDNA FLJ52040 complete cds, highly similar to Mus musculus BCL2-associated transcription factor 1 (Bclaf1), transcript variant 3, mRNA.
JD494869 - Sequence 475893 from Patent EP1572962.
AK308870 - Homo sapiens cDNA, FLJ98911.
AF249273 - Homo sapiens Bcl-2-associated transcription factor short form mRNA, complete cds.
AB385290 - Synthetic construct DNA, clone: pF1KA0164, Homo sapiens BCLAF1 gene for BCL2-associated transcription factor 1, complete cds, without stop codon, in Flexi system.
AK309259 - Homo sapiens cDNA, FLJ99300.
BC063846 - Homo sapiens BCL2-associated transcription factor 1, mRNA (cDNA clone IMAGE:6501081), partial cds.
BC047887 - Homo sapiens BCL2-associated transcription factor 1, mRNA (cDNA clone IMAGE:6470751), partial cds.
BC047687 - Homo sapiens BCL2-associated transcription factor 1, mRNA (cDNA clone IMAGE:6021719), partial cds.
BC078160 - Homo sapiens BCL2-associated transcription factor 1, mRNA (cDNA clone IMAGE:6153817), partial cds.
BC016682 - Homo sapiens BCL2-associated transcription factor 1, mRNA (cDNA clone IMAGE:3923680), partial cds.
BC056894 - Homo sapiens BCL2-associated transcription factor 1, mRNA (cDNA clone IMAGE:6012257), partial cds.
JD269387 - Sequence 250411 from Patent EP1572962.
JD254478 - Sequence 235502 from Patent EP1572962.
JD246502 - Sequence 227526 from Patent EP1572962.
JD445443 - Sequence 426467 from Patent EP1572962.
JD330537 - Sequence 311561 from Patent EP1572962.
JD206761 - Sequence 187785 from Patent EP1572962.
JD038956 - Sequence 19980 from Patent EP1572962.
JD540441 - Sequence 521465 from Patent EP1572962.
JD419205 - Sequence 400229 from Patent EP1572962.
JD261907 - Sequence 242931 from Patent EP1572962.
JD250746 - Sequence 231770 from Patent EP1572962.
JD170630 - Sequence 151654 from Patent EP1572962.
JD345966 - Sequence 326990 from Patent EP1572962.
JD315829 - Sequence 296853 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A2RU75, B7ZM58, BCLF1_HUMAN, BTF, E1P586, ENST00000531224.1, ENST00000531224.2, ENST00000531224.3, ENST00000531224.4, ENST00000531224.5, KIAA0164, NR_170164, Q14673, Q86WU6, Q86WY0, Q9NYF8, uc324imo.1, uc324imo.2
UCSC ID: ENST00000531224.6_13
RefSeq Accession: NM_014739.3
Protein: Q9NYF8 (aka BCLF1_HUMAN or BCF1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.