Human Gene XIAP (ENST00000355640.3_4) from GENCODE V47lift37
  Description: X-linked inhibitor of apoptosis, transcript variant 4 (from RefSeq NM_001378590.1)
Gencode Transcript: ENST00000355640.3_4
Gencode Gene: ENSG00000101966.14_8
Transcript (Including UTRs)
   Position: hg19 chrX:122,994,122-123,047,815 Size: 53,694 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chrX:123,019,513-123,041,031 Size: 21,519 Coding Exon Count: 6 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:122,994,122-123,047,815)mRNA (may differ from genome)Protein (497 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: XIAP_HUMAN
DESCRIPTION: RecName: Full=E3 ubiquitin-protein ligase XIAP; EC=6.3.2.-; AltName: Full=Baculoviral IAP repeat-containing protein 4; AltName: Full=IAP-like protein; Short=ILP; Short=hILP; AltName: Full=Inhibitor of apoptosis protein 3; Short=IAP-3; Short=hIAP-3; Short=hIAP3; AltName: Full=X-linked inhibitor of apoptosis protein; Short=X-linked IAP;
FUNCTION: Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, copper homeostasis, mitogenic kinase signaling, cell proliferation, as well as cell invasion and metastasis. Acts as a direct caspase inhibitor. Directly bind to the active site pocket of CASP3 and CASP7 and obstructs substrate entry. Inactivates CASP9 by keeping it in a monomeric, inactive state. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and the target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, CASP3, CASP7, CASP8, CASP9, MAP3K2/MEKK2, DIABLO/SMAC, AIFM1, CCS and BIRC5/survivin. Ubiquitinion of CCS leads to enhancement of its chaperone activity toward its physiologic target, SOD1, rather than proteasomal degradation. Ubiquitinion of MAP3K2/MEKK2 and AIFM1 does not lead to proteasomal degradation. Plays a role in copper homeostasis by ubiquitinationg COMMD1 and promoting its proteasomal degradation. Can also function as E3 ubiquitin-protein ligase of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Regulates the BMP signaling pathway and the SMAD and MAP3K7/TAK1 dependent pathways leading to NF-kappa-B and JNK activation. Acts as an important regulator of innate immune signaling via regulation of Nodlike receptors (NLRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8. Acts as a positive regulator of Wnt signaling and ubiquitinates TLE1, TLE2, TLE3, TLE4 and AES. Ubiquitination of TLE3 results in inhibition of its interaction with TCF7L2/TCF4 thereby allowing efficient recruitment and binding of the transcriptional coactivator beta- catenin to TCF7L2/TCF4 that is required to initiate a Wnt-specific transcriptional program.
SUBUNIT: Monomer, and homodimer. Interacts with DIABLO/SMAC and with PRSS25; these interactions inhibit apoptotic suppressor activity. Interacts with TAB1/MAP3K7IP1 and AIFM1. Interaction with SMAC hinders binding of TAB1/MAP3K7IP1 and AIFM1. Interacts with TCF25 and COMMD1. Interacts with SEPT4 isoform 6, but not with other SEPT4 isoforms. Interacts with RIP1, RIP2, RIP3, RIP4, CCS and USP19. Interacts (via BIR 2 domain and BIR 3 domain) with HAX1 (via C-terminus) and this interaction blocks ubiquitination of XIAP/BIRC4. Interacts with the monomeric form of BIRC5/survivin. Interacts with TLE3 and TCF7L2/TCF4.
INTERACTION: P55210:CASP7; NbExp=2; IntAct=EBI-517127, EBI-523958; P55211:CASP9; NbExp=5; IntAct=EBI-517127, EBI-516799; Q9NR28:DIABLO; NbExp=7; IntAct=EBI-517127, EBI-517508; O43464:HTRA2; NbExp=10; IntAct=EBI-517127, EBI-517086; Q9JIY5:Htra2 (xeno); NbExp=4; IntAct=EBI-517127, EBI-2365838; P57078:RIPK4; NbExp=2; IntAct=EBI-517127, EBI-4422308; O43236-6:SEPT4; NbExp=4; IntAct=EBI-517127, EBI-4372019; Q8IUQ4:SIAH1; NbExp=3; IntAct=EBI-517127, EBI-747107; P51668:UBE2D1; NbExp=2; IntAct=EBI-517127, EBI-743540; P62837:UBE2D2; NbExp=2; IntAct=EBI-517127, EBI-347677; P61077:UBE2D3; NbExp=2; IntAct=EBI-517127, EBI-348268; P61088:UBE2N; NbExp=2; IntAct=EBI-517127, EBI-1052908; Q13404:UBE2V1; NbExp=2; IntAct=EBI-517127, EBI-1050671;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=TLE3 promotes its nuclear localization.
TISSUE SPECIFICITY: Ubiquitous, except peripheral blood leukocytes.
DOMAIN: The first BIR domain is involved in interaction with TAB1/MAP3K7IP1 and is important for dimerization. The second BIR domain is sufficient to inhibit CASP3 and CASP7, while the third BIR is involved in CASP9 inhibition. The interactions with DIABLO/SMAC and PRSS25 are mediated by the second and third BIR domains.
PTM: S-Nitrosylation down-regulates its E3 ubiquitin-protein ligase activity.
PTM: Autoubiquitinated and degraded by the proteasome in apoptotic cells.
PTM: Phosphorylation by PKB/AKT protects XIAP against ubiquitination and protects the protein against proteasomal degradation.
DISEASE: Defects in XIAP are the cause of lymphoproliferative syndrome X-linked type 2 (XLP2) [MIM:300635]. XLP is a rare immunodeficiency characterized by extreme susceptibility to infection with Epstein-Barr virus (EBV). Symptoms include severe or fatal mononucleosis, acquired hypogammaglobulinemia, pancytopenia and malignant lymphoma.
SIMILARITY: Belongs to the IAP family.
SIMILARITY: Contains 3 BIR repeats.
SIMILARITY: Contains 1 RING-type zinc finger.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/XIAP";
WEB RESOURCE: Name=BIRC4base; Note=XIAP mutation db; URL="http://bioinf.uta.fi/BIRC4base/";
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/birc4/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: XIAP
Diseases sorted by gene-association score: lymphoproliferative syndrome, x-linked, 2* (1027), lymphoproliferative syndrome, x-linked, 1* (329), lymphoproliferative syndrome (20), dysgammaglobulinemia (13), malignant pleural mesothelioma (9), hemophagocytic lymphohistiocytosis (8), cowpox (7), myasthenic syndrome, congenital, 13, with tubular aggregates (7), chronic neutrophilic leukemia (6), thymic hyperplasia (6), lung cancer (5), chronic lymphocytic leukemia (5), alopecia, androgenetic, 1 (5), granulomatous hepatitis (4), adult t-cell leukemia (3), ovarian cancer, somatic (3), colorectal cancer (2), pancreatic cancer (2), hepatocellular carcinoma (2), prostate cancer (2), lymphoma, non-hodgkin (1), leukemia, acute myeloid (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.37 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 226.86 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -130.70306-0.427 Picture PostScript Text
3' UTR -2350.206784-0.346 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001370 - BIR
IPR001841 - Znf_RING
IPR013083 - Znf_RING/FYVE/PHD

Pfam Domains:
PF00653 - Inhibitor of Apoptosis domain
PF13920 - Zinc finger, C3HC4 type (RING finger)

SCOP Domains:
57850 - RING/U-box
57924 - Inhibitor of apoptosis (IAP) repeat

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1C9Q - NMR MuPIT 1F9X - NMR MuPIT 1G3F - NMR MuPIT 1G73 - X-ray MuPIT 1I3O - X-ray MuPIT 1I4O - X-ray MuPIT 1I51 - X-ray MuPIT 1KMC - X-ray MuPIT 1NW9 - X-ray MuPIT 1TFQ - NMR MuPIT 1TFT - NMR MuPIT 2ECG - NMR MuPIT 2JK7 - X-ray MuPIT 2KNA - NMR MuPIT 2OPY - X-ray MuPIT 2OPZ - X-ray MuPIT 2POI - X-ray MuPIT 2POP - X-ray MuPIT 2QRA - X-ray MuPIT 2VSL - X-ray MuPIT 3CLX - X-ray MuPIT 3CM2 - X-ray MuPIT 3CM7 - X-ray MuPIT 3EYL - X-ray MuPIT 3G76 - X-ray MuPIT 3HL5 - X-ray MuPIT 3UW4 - X-ray MuPIT 3UW5 - X-ray


ModBase Predicted Comparative 3D Structure on P98170
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004842 ubiquitin-protein transferase activity
GO:0004869 cysteine-type endopeptidase inhibitor activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0030414 peptidase inhibitor activity
GO:0042802 identical protein binding
GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process
GO:0046872 metal ion binding
GO:0061630 ubiquitin protein ligase activity

Biological Process:
GO:0006915 apoptotic process
GO:0006974 cellular response to DNA damage stimulus
GO:0010466 negative regulation of peptidase activity
GO:0016055 Wnt signaling pathway
GO:0016567 protein ubiquitination
GO:0030510 regulation of BMP signaling pathway
GO:0031398 positive regulation of protein ubiquitination
GO:0042127 regulation of cell proliferation
GO:0043066 negative regulation of apoptotic process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045088 regulation of innate immune response
GO:0050727 regulation of inflammatory response
GO:0055070 copper ion homeostasis
GO:0070424 regulation of nucleotide-binding oligomerization domain containing signaling pathway
GO:0090263 positive regulation of canonical Wnt signaling pathway
GO:1902530 positive regulation of protein linear polyubiquitination
GO:1990001 inhibition of cysteine-type endopeptidase activity involved in apoptotic process
GO:0090307 mitotic spindle assembly

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  BC030771 - Homo sapiens baculoviral IAP repeat-containing 4, mRNA (cDNA clone IMAGE:4814521).
AK313883 - Homo sapiens cDNA, FLJ94517, highly similar to Homo sapiens baculoviral IAP repeat-containing 4 (BIRC4), mRNA.
AK309704 - Homo sapiens cDNA, FLJ99745.
HV708937 - JP 2012506450-A/35: Methods for treating eye disorders.
U32974 - Human IAP-like protein ILP mRNA, complete cds.
BC032729 - Homo sapiens X-linked inhibitor of apoptosis, mRNA (cDNA clone MGC:45369 IMAGE:5532247), complete cds.
DD104489 - METHODS FOR IDENTIFYING SMALL MOLECULES THAT BIND SPECIFIC RNA STRUCTURAL MOTIFS.
U45880 - Human X-linked inhibitor of apotosis protein XIAP mRNA, complete cds.
CU689510 - Synthetic construct Homo sapiens gateway clone IMAGE:100019679 5' read BIRC4 mRNA.
AB528456 - Synthetic construct DNA, clone: pF1KB5887, Homo sapiens XIAP gene for X-linked inhibitor of apoptosis, without stop codon, in Flexi system.
DQ894012 - Synthetic construct Homo sapiens clone IMAGE:100008472; FLH166540.01L; RZPDo839A0387D baculoviral IAP repeat-containing 4 (BIRC4) gene, encodes complete protein.
DQ890857 - Synthetic construct clone IMAGE:100003487; FLH166544.01X; RZPDo839A0388D baculoviral IAP repeat-containing 4 (BIRC4) gene, encodes complete protein.
KJ896441 - Synthetic construct Homo sapiens clone ccsbBroadEn_05835 XIAP gene, encodes complete protein.
JD055707 - Sequence 36731 from Patent EP1572962.
JD224313 - Sequence 205337 from Patent EP1572962.
JD442612 - Sequence 423636 from Patent EP1572962.
JD349674 - Sequence 330698 from Patent EP1572962.
JD482497 - Sequence 463521 from Patent EP1572962.
JD337582 - Sequence 318606 from Patent EP1572962.
JD371279 - Sequence 352303 from Patent EP1572962.
JD542917 - Sequence 523941 from Patent EP1572962.
JD213069 - Sequence 194093 from Patent EP1572962.
JD024015 - Sequence 5039 from Patent EP1572962.
BC046147 - Homo sapiens mRNA similar to SMC (structural maintenance of chromosomes 1)-like 1 (S. cerevisiae) (cDNA clone IMAGE:6064730).
AK130423 - Homo sapiens cDNA FLJ26913 fis, clone RCT02969.
JD301083 - Sequence 282107 from Patent EP1572962.
JD256488 - Sequence 237512 from Patent EP1572962.
JD256489 - Sequence 237513 from Patent EP1572962.
JD476541 - Sequence 457565 from Patent EP1572962.
JD564374 - Sequence 545398 from Patent EP1572962.
JD558293 - Sequence 539317 from Patent EP1572962.
JD105568 - Sequence 86592 from Patent EP1572962.
JD208621 - Sequence 189645 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_caspasePathway - Caspase Cascade in Apoptosis
h_bcellsurvivalPathway - B Cell Survival Pathway
h_mitochondriaPathway - Role of Mitochondria in Apoptotic Signaling
h_HivnefPathway - HIV-I Nef: negative effector of Fas and TNF
h_deathPathway - Induction of apoptosis through DR3 and DR4/5 Death Receptors

Reactome (by CSHL, EBI, and GO)

Protein P98170 (Reactome details) participates in the following event(s):

R-HSA-3322431 XIAP binds TLE
R-HSA-3322434 XIAP dissociates from ub-TLE
R-HSA-114306 SMAC binds XIAP:Caspase-3
R-HSA-114354 SMAC binds XIAP:Caspase-7
R-HSA-114361 SMAC binds XIAP:Caspase-9
R-HSA-114392 Dissociation of Caspase-7 from SMAC:XIAP:Caspase-7
R-HSA-114419 Dissociation of Caspase-3 from SMAC:XIAP:Caspase-3
R-HSA-114440 Dissociation of Caspase-9 from SMAC:XIAP:Caspase-9
R-HSA-5357780 TNF:TNFR1:TRADD:TRAF2:RIPK1 recruits BIRC2/3 (cIAP1/2)
R-HSA-3322429 XIAP monoubiquinates TLE
R-HSA-6807134 NEDD4, WWP2, CHIP and XIAP polyubiquitinate PTEN
R-HSA-5357860 TNF:TNFR1:TRADD:TRAF2:K63polyUb-RIPK1:BIRC2/3 recruits TAK1 complex
R-HSA-5357904 TNF:TNFR1:TRADD:TRAF2:RIPK1 binds LUBAC
R-HSA-5357928 CLIP3 and CYLD bind TNF signaling complex
R-HSA-5693055 TAX1BP1:TNFAIP3(A20) binds RIPK1-containing complexes
R-HSA-5357757 BIRC(cIAP1/2) ubiquitinates RIPK1
R-HSA-6807106 PTEN undergoes monoubiquitination
R-HSA-5357776 TNF:TNFR1:TRADD:TRAF2:K63polyUb-RIPK1:BIRC2,3:LUBAC recruits IKKA:IKBKB:IKBKG
R-HSA-5693108 TNFAIP3 (A20) ubiquitinates RIPK1 with K48-linked Ub chains
R-HSA-3769402 Deactivation of the beta-catenin transactivating complex
R-HSA-111463 SMAC binds to IAPs
R-HSA-111464 SMAC-mediated dissociation of IAP:caspase complexes
R-HSA-5357956 TNFR1-induced NFkappaB signaling pathway
R-HSA-5675482 Regulation of necroptotic cell death
R-HSA-201681 TCF dependent signaling in response to WNT
R-HSA-111469 SMAC-mediated apoptotic response
R-HSA-8948751 Regulation of PTEN stability and activity
R-HSA-5357905 Regulation of TNFR1 signaling
R-HSA-75893 TNF signaling
R-HSA-5213460 RIPK1-mediated regulated necrosis
R-HSA-8948747 Regulation of PTEN localization
R-HSA-195721 Signaling by WNT
R-HSA-111471 Apoptotic factor-mediated response
R-HSA-6807070 PTEN Regulation
R-HSA-73887 Death Receptor Signalling
R-HSA-5218859 Regulated Necrosis
R-HSA-162582 Signal Transduction
R-HSA-109606 Intrinsic Pathway for Apoptosis
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-5357801 Programmed Cell Death
R-HSA-109581 Apoptosis
R-HSA-9006925 Intracellular signaling by second messengers

-  Other Names for This Gene
  Alternate Gene Symbols: API3, BIRC4, D3DTF2, ENST00000355640.1, ENST00000355640.2, IAP3, NM_001378590, P98170, Q9NQ14, uc317zek.1, XIAP , XIAP_HUMAN
UCSC ID: ENST00000355640.3_4
RefSeq Accession: NM_001378590.1
Protein: P98170 (aka XIAP_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene XIAP:
x-lpd (X-Linked Lymphoproliferative Disease)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.