Human Gene CAMK4 (ENST00000282356.9_4) from GENCODE V47lift37
  Description: calcium/calmodulin dependent protein kinase IV, transcript variant 1 (from RefSeq NM_001744.6)
Gencode Transcript: ENST00000282356.9_4
Gencode Gene: ENSG00000152495.11_7
Transcript (Including UTRs)
   Position: hg19 chr5:110,560,082-110,830,584 Size: 270,503 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr5:110,560,182-110,820,164 Size: 259,983 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:110,560,082-110,830,584)mRNA (may differ from genome)Protein (473 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KCC4_HUMAN
DESCRIPTION: RecName: Full=Calcium/calmodulin-dependent protein kinase type IV; Short=CaMK IV; EC=2.7.11.17; AltName: Full=CaM kinase-GR;
FUNCTION: Calcium/calmodulin-dependent protein kinase that operates in the calcium-triggered CaMKK-CaMK4 signaling cascade and regulates, mainly by phosphorylation, the activity of several transcription activators, such as CREB1, MEF2D, JUN and RORA, which play pivotal roles in immune response, inflammation, and memory consodilation. In the thymus, regulates the CD4(+)/CD8(+) double positive thymocytes selection threshold during T-cell ontogeny. In CD4 memory T-cells, is required to link T-cell antigen receptor (TCR) signaling to the production of IL2, IFNG and IL4 (through the regulation of CREB and MEF2). Regulates the differentiation and survival phases of osteolclasts and dendritic cells (DCs). Mediates DCs survival by linking TLR4 and the regulation of temporal expression of BCL2. Phosphrylates the transcription activator CREB1 on 'Ser-133' in hippocampal neuron nuclei and contribute to memory consolidation and long term potentiation (LTP) in the hippocampus. Can activate the MAP kinases MAPK1/ERK2, MAPK8/JNK1 and MAPK14/p38 and stimulate transcription through the phosphorylation of ELK1 and ATF2. Can also phosphorylate in vitro CREBBP, PRM2, MEF2A and STMN1/OP18.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Activated by Ca(2+)/calmodulin. Binding of calmodulin results in conformational change that relieves intrasteric autoinhibition and allows phosphorylation of Thr-200 within the activation loop by CaMKK1 or CaMKK2. Phosphorylation of Thr-200 results in a 10-20-fold increase in total activity to generate Ca(2+)/calmodulin-independent activity. Autophosphorylation of the N-terminus Ser-12 and Ser-13 is required for full activation. Inactivated by protein phosphatase 2A (PPP2CA/PPP2CB) which dephosphorylates Thr-200, thereby terminating autonomous activity and helping to maintain the enzyme in its autoinhibited state.
SUBUNIT: Monomer (By similarity). Interacts with protein phosphatase 2A (PPP2CA/PPP2CB); the interaction is mutually exclusive with binding to Ca(2+)/calmodulin.
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Localized in hippocampal neuron nuclei. In spermatids, associated with chromatin and nuclear matrix (By similarity).
TISSUE SPECIFICITY: Expressed in brain, thymus, CD4 T-cells, testis and epithelial ovarian cancer tissue.
DEVELOPMENTAL STAGE: Expressed during differentiation of monocyte- derived dendritic cells (at protein level).
DOMAIN: The autoinhibitory domain overlaps with the calmodulin binding region and interacts in the inactive folded state with the catalytic domain as a pseudosubstrate.
PTM: Phosphorylated by CaMKK1 and CaMKK2 on Thr-200. Dephosphorylated by protein phosphatase 2A. Autophosphorylated on Ser-12 and Ser-13.
PTM: Glycosylation at Ser-189 modulates the phosphorylation of CaMK4 at Thr-200 and negatively regulates its activity toward CREB1 in basal conditions and during early inomycin stimulation.
SIMILARITY: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. CaMK subfamily.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=AAH16695.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CAMK4
Diseases sorted by gene-association score: gingival fibromatosis (7), cerebral hypoxia (7)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 46.59 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 157.72 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -51.10100-0.511 Picture PostScript Text
3' UTR -2491.6010420-0.239 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2W4O - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q16566
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004683 calmodulin-dependent protein kinase activity
GO:0005516 calmodulin binding
GO:0005524 ATP binding
GO:0009931 calcium-dependent protein serine/threonine kinase activity
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0002250 adaptive immune response
GO:0002376 immune system process
GO:0006468 protein phosphorylation
GO:0006954 inflammatory response
GO:0007165 signal transduction
GO:0007616 long-term memory
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0033081 regulation of T cell differentiation in thymus
GO:0035556 intracellular signal transduction
GO:0043011 myeloid dendritic cell differentiation
GO:0045670 regulation of osteoclast differentiation
GO:0045893 positive regulation of transcription, DNA-templated
GO:0046777 protein autophosphorylation
GO:0002372 myeloid dendritic cell cytokine production

Cellular Component:
GO:0001650 fibrillar center
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LP896353 - Sequence 1217 from Patent EP3253886.
L24959 - Human calcium/calmodulin dependent protein kinase mRNA, complete cds.
AK311662 - Homo sapiens cDNA, FLJ18704.
AK312840 - Homo sapiens cDNA, FLJ93281, highly similar to Homo sapiens calcium/calmodulin-dependent protein kinase IV (CAMK4), mRNA.
BC025687 - Homo sapiens calcium/calmodulin-dependent protein kinase IV, mRNA (cDNA clone MGC:36771 IMAGE:5205478), complete cds.
BC016695 - Homo sapiens calcium/calmodulin-dependent protein kinase IV, mRNA (cDNA clone IMAGE:4104268), partial cds.
D30742 - Homo sapiens mRNA for calmodulin-dependent protein kinase IV, complete cds.
L17000 - Homo sapiens calcium/calmodulin-dependent protein kinase mRNA, complete cds.
CU677679 - Synthetic construct Homo sapiens gateway clone IMAGE:100019564 5' read CAMK4 mRNA.
AB529005 - Synthetic construct DNA, clone: pF1KE0951, Homo sapiens CAMK4 gene for calcium/calmodulin-dependent protein kinase IV, without stop codon, in Flexi system.
DQ896523 - Synthetic construct Homo sapiens clone IMAGE:100010983; FLH195151.01L; RZPDo839A0384D calcium/calmodulin-dependent protein kinase IV (CAMK4) gene, encodes complete protein.
DQ896524 - Synthetic construct Homo sapiens clone IMAGE:100010984; FLH195152.01L; RZPDo839B0384D calcium/calmodulin-dependent protein kinase IV (CAMK4) gene, encodes complete protein.
DQ896525 - Synthetic construct Homo sapiens clone IMAGE:100010985; FLH195153.01L; RZPDo839C0384D calcium/calmodulin-dependent protein kinase IV (CAMK4) gene, encodes complete protein.
DQ896526 - Synthetic construct Homo sapiens clone IMAGE:100010986; FLH195154.01L; RZPDo839D0384D calcium/calmodulin-dependent protein kinase IV (CAMK4) gene, encodes complete protein.
DQ892902 - Synthetic construct clone IMAGE:100005532; FLH195157.01X; RZPDo839G0384D calcium/calmodulin-dependent protein kinase IV (CAMK4) gene, encodes complete protein.
DQ893195 - Synthetic construct clone IMAGE:100005825; FLH195155.01X; RZPDo839E0384D calcium/calmodulin-dependent protein kinase IV (CAMK4) gene, encodes complete protein.
DQ893196 - Synthetic construct clone IMAGE:100005826; FLH195156.01X; RZPDo839F0384D calcium/calmodulin-dependent protein kinase IV (CAMK4) gene, encodes complete protein.
KJ896535 - Synthetic construct Homo sapiens clone ccsbBroadEn_05929 CAMK4 gene, encodes complete protein.
KJ905156 - Synthetic construct Homo sapiens clone ccsbBroadEn_14561 CAMK4 gene, encodes complete protein.
AL833368 - Homo sapiens mRNA; cDNA DKFZp667F2314 (from clone DKFZp667F2314).
JD447486 - Sequence 428510 from Patent EP1572962.
JD345303 - Sequence 326327 from Patent EP1572962.
JD507895 - Sequence 488919 from Patent EP1572962.
JD167517 - Sequence 148541 from Patent EP1572962.
JD517297 - Sequence 498321 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_pgc1aPathway - Regulation of PGC-1a
h_nfatPathway - NFAT and Hypertrophy of the heart (Transcription in the broken heart)
h_CaCaMPathway - Ca++/ Calmodulin-dependent Protein Kinase Activation
h_stathminPathway - Stathmin and breast cancer resistance to antimicrotubule agents

Reactome (by CSHL, EBI, and GO)

Protein Q16566 (Reactome details) participates in the following event(s):

R-HSA-111913 Calmodulin binds CaMK IV
R-HSA-112282 CamKIV enters the nucleus
R-HSA-111915 CaMK IV autophosphorylation
R-HSA-111912 CaMK IV phosphorylates CREB
R-HSA-443480 Phosphorylation of CREB by CaMKIV
R-HSA-111932 CaMK IV-mediated phosphorylation of CREB
R-HSA-442745 Activation of CaMK IV
R-HSA-111933 Calmodulin induced events
R-HSA-442717 CREB phosphorylation through the activation of CaMKK
R-HSA-111997 CaM pathway
R-HSA-438064 Post NMDA receptor activation events
R-HSA-2151201 Transcriptional activation of mitochondrial biogenesis
R-HSA-111996 Ca-dependent events
R-HSA-1489509 DAG and IP3 signaling
R-HSA-442755 Activation of NMDA receptor and postsynaptic events
R-HSA-1592230 Mitochondrial biogenesis
R-HSA-112043 PLC beta mediated events
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-112314 Neurotransmitter receptors and postsynaptic signal transmission
R-HSA-1852241 Organelle biogenesis and maintenance
R-HSA-112040 G-protein mediated events
R-HSA-162582 Signal Transduction
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-111885 Opioid Signalling
R-HSA-112316 Neuronal System
R-HSA-418594 G alpha (i) signalling events
R-HSA-388396 GPCR downstream signalling
R-HSA-372790 Signaling by GPCR

-  Other Names for This Gene
  Alternate Gene Symbols: CAMK, CAMK-GR, CAMKIV, D3DSZ7, ENST00000282356.1, ENST00000282356.2, ENST00000282356.3, ENST00000282356.4, ENST00000282356.5, ENST00000282356.6, ENST00000282356.7, ENST00000282356.8, KCC4_HUMAN, NM_001744, Q16566, uc317jzg.1, uc317jzg.2
UCSC ID: ENST00000282356.9_4
RefSeq Accession: NM_001744.6
Protein: Q16566 (aka KCC4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.