Human Gene CAMKK2 (ENST00000404169.8_9) from GENCODE V47lift37
  Description: calcium/calmodulin dependent protein kinase kinase 2, transcript variant 8 (from RefSeq NM_001270485.2)
Gencode Transcript: ENST00000404169.8_9
Gencode Gene: ENSG00000110931.19_17
Transcript (Including UTRs)
   Position: hg19 chr12:121,675,495-121,734,512 Size: 59,018 Total Exon Count: 17 Strand: -
Coding Region
   Position: hg19 chr12:121,678,502-121,712,329 Size: 33,828 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:121,675,495-121,734,512)mRNA (may differ from genome)Protein (588 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KKCC2_HUMAN
DESCRIPTION: RecName: Full=Calcium/calmodulin-dependent protein kinase kinase 2; Short=CaM-KK 2; Short=CaM-kinase kinase 2; Short=CaMKK 2; EC=2.7.11.17; AltName: Full=Calcium/calmodulin-dependent protein kinase kinase beta; Short=CaM-KK beta; Short=CaM-kinase kinase beta; Short=CaMKK beta;
FUNCTION: Calcium/calmodulin-dependent protein kinase belonging to a proposed calcium-triggered signaling cascade involved in a number of cellular processes. Isoform 1, isoform 2 and isoform 3 phosphorylate CAMK1 and CAMK4. Isoform 3 phosphorylates CAMK1D. Isoform 4, isoform 5 and isoform 6 lacking part of the calmodulin- binding domain are inactive. Seems to be involved in hippocampal activation of CREB1 (By similarity).
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Activated by Ca(2+)/calmodulin. Binding of calmodulin may relieve intrasteric autoinhibition. Autophosphorylation does not alter activity or regulation by Ca(2+)/calmodulin. In part, activity is independent on Ca(2+)/calmodulin (By similarity).
SUBUNIT: Interacts with calmodulin (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
TISSUE SPECIFICITY: Ubiquitously expressed with higher levels in the brain. Intermediate levels are detected in spleen, prostate, thyroid and leukocytes. The lowest level is in lung.
DOMAIN: The autoinhibitory domain overlaps with the calmodulin binding region and may be involved in intrasteric autoinhibition.
DOMAIN: The RP domain (arginine/proline-rich) is involved in the recognition of CAMKI and CAMK4 as substrates (By similarity).
PTM: Autophosphorylated (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=AAC72943.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAA34507.2; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAD38990.1; Type=Miscellaneous discrepancy; Note=Intron retention;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 190.70 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 1035.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -62.20131-0.475 Picture PostScript Text
3' UTR -1051.203007-0.350 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020636 - Ca/CaM-dep_Ca-dep_prot_Kinase
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF14531 - Kinase-like

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2ZV2 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q96RR4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004683 calmodulin-dependent protein kinase activity
GO:0004713 protein tyrosine kinase activity
GO:0005509 calcium ion binding
GO:0005516 calmodulin binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0000165 MAPK cascade
GO:0001934 positive regulation of protein phosphorylation
GO:0006468 protein phosphorylation
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0018107 peptidyl-threonine phosphorylation
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0019722 calcium-mediated signaling
GO:0034614 cellular response to reactive oxygen species
GO:0045859 regulation of protein kinase activity
GO:0045860 positive regulation of protein kinase activity
GO:0045893 positive regulation of transcription, DNA-templated
GO:0046777 protein autophosphorylation
GO:0061762 CAMKK-AMPK signaling cascade
GO:1903599 positive regulation of mitophagy

Cellular Component:
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0042995 cell projection


-  Descriptions from all associated GenBank mRNAs
  AB018330 - Homo sapiens KIAA0787 mRNA for KIAA0787 protein.
AF321386 - Homo sapiens CaMKK beta 1 isoform mRNA, complete cds.
AF321387 - Homo sapiens CaMKK beta 1 isoform mRNA, complete cds.
AF321388 - Homo sapiens CaMKK beta 1 isoform mRNA, complete cds.
AF287630 - Homo sapiens calcium/calmodulin-dependent protein kinase kinase b1 mRNA, complete cds.
AL834322 - Homo sapiens mRNA; cDNA DKFZp761L24121 (from clone DKFZp761L24121).
JD204078 - Sequence 185102 from Patent EP1572962.
JD516705 - Sequence 497729 from Patent EP1572962.
JD264663 - Sequence 245687 from Patent EP1572962.
JD541710 - Sequence 522734 from Patent EP1572962.
JD171904 - Sequence 152928 from Patent EP1572962.
JD328469 - Sequence 309493 from Patent EP1572962.
JD115565 - Sequence 96589 from Patent EP1572962.
JD364824 - Sequence 345848 from Patent EP1572962.
JD368502 - Sequence 349526 from Patent EP1572962.
JD404530 - Sequence 385554 from Patent EP1572962.
JD399159 - Sequence 380183 from Patent EP1572962.
JD162687 - Sequence 143711 from Patent EP1572962.
JD279263 - Sequence 260287 from Patent EP1572962.
JD546723 - Sequence 527747 from Patent EP1572962.
JD338714 - Sequence 319738 from Patent EP1572962.
JD042412 - Sequence 23436 from Patent EP1572962.
JD328215 - Sequence 309239 from Patent EP1572962.
JD072695 - Sequence 53719 from Patent EP1572962.
JD387868 - Sequence 368892 from Patent EP1572962.
JD047258 - Sequence 28282 from Patent EP1572962.
JD369886 - Sequence 350910 from Patent EP1572962.
JD363358 - Sequence 344382 from Patent EP1572962.
JD050017 - Sequence 31041 from Patent EP1572962.
JD454528 - Sequence 435552 from Patent EP1572962.
JD072997 - Sequence 54021 from Patent EP1572962.
JD535891 - Sequence 516915 from Patent EP1572962.
JD457633 - Sequence 438657 from Patent EP1572962.
JD283960 - Sequence 264984 from Patent EP1572962.
JD105476 - Sequence 86500 from Patent EP1572962.
JD067778 - Sequence 48802 from Patent EP1572962.
JD394139 - Sequence 375163 from Patent EP1572962.
JD278744 - Sequence 259768 from Patent EP1572962.
JD166576 - Sequence 147600 from Patent EP1572962.
JD370168 - Sequence 351192 from Patent EP1572962.
JD320855 - Sequence 301879 from Patent EP1572962.
JD368522 - Sequence 349546 from Patent EP1572962.
JD466662 - Sequence 447686 from Patent EP1572962.
JD219712 - Sequence 200736 from Patent EP1572962.
JD486632 - Sequence 467656 from Patent EP1572962.
JD436304 - Sequence 417328 from Patent EP1572962.
JD102987 - Sequence 84011 from Patent EP1572962.
JD508220 - Sequence 489244 from Patent EP1572962.
JD551842 - Sequence 532866 from Patent EP1572962.
JD399443 - Sequence 380467 from Patent EP1572962.
JD279328 - Sequence 260352 from Patent EP1572962.
JD467416 - Sequence 448440 from Patent EP1572962.
JD267362 - Sequence 248386 from Patent EP1572962.
JD353479 - Sequence 334503 from Patent EP1572962.
JD218453 - Sequence 199477 from Patent EP1572962.
JD469506 - Sequence 450530 from Patent EP1572962.
JD387809 - Sequence 368833 from Patent EP1572962.
JD038691 - Sequence 19715 from Patent EP1572962.
JD202926 - Sequence 183950 from Patent EP1572962.
JD201693 - Sequence 182717 from Patent EP1572962.
JD209599 - Sequence 190623 from Patent EP1572962.
JD168078 - Sequence 149102 from Patent EP1572962.
JD349850 - Sequence 330874 from Patent EP1572962.
JD064784 - Sequence 45808 from Patent EP1572962.
JD494974 - Sequence 475998 from Patent EP1572962.
AK311473 - Homo sapiens cDNA, FLJ18515.
AF140507 - Homo sapiens Ca2+/calmodulin-dependent protein kinase kinase beta (CAMKKB) mRNA, complete cds.
JD288105 - Sequence 269129 from Patent EP1572962.
JD527218 - Sequence 508242 from Patent EP1572962.
JD200622 - Sequence 181646 from Patent EP1572962.
JD248589 - Sequence 229613 from Patent EP1572962.
JD564786 - Sequence 545810 from Patent EP1572962.
JD076950 - Sequence 57974 from Patent EP1572962.
JD144502 - Sequence 125526 from Patent EP1572962.
JD396895 - Sequence 377919 from Patent EP1572962.
JD459331 - Sequence 440355 from Patent EP1572962.
JD163341 - Sequence 144365 from Patent EP1572962.
JD362681 - Sequence 343705 from Patent EP1572962.
JD543777 - Sequence 524801 from Patent EP1572962.
JD476224 - Sequence 457248 from Patent EP1572962.
BC000318 - Homo sapiens calcium/calmodulin-dependent protein kinase kinase 2, beta, mRNA (cDNA clone IMAGE:2821696), partial cds.
BC026060 - Homo sapiens calcium/calmodulin-dependent protein kinase kinase 2, beta, mRNA (cDNA clone MGC:15254 IMAGE:3842706), complete cds.
AK024748 - Homo sapiens cDNA: FLJ21095 fis, clone CAS03846.
AK300865 - Homo sapiens cDNA FLJ53477 complete cds, highly similar to Calcium/calmodulin-dependent protein kinase kinase 2 (EC 2.7.11.17).
JD399187 - Sequence 380211 from Patent EP1572962.
JD508056 - Sequence 489080 from Patent EP1572962.
AB081336 - Homo sapiens Camkk beta-3 mRNA for Ca2+/calmodulin-dependent protein kinase kinase beta-3, complete cds.
AB081337 - Homo sapiens Camkk beta-3x mRNA for Ca2+/calmodulin-dependent protein kinase kinase beta-3x, complete cds.
AK292072 - Homo sapiens cDNA FLJ75891 complete cds, highly similar to Homo sapiens calcium/calmodulin-dependent protein kinase kinase 2, beta (CAMKK2), transcript variant 2, mRNA.
JD540582 - Sequence 521606 from Patent EP1572962.
JD399979 - Sequence 381003 from Patent EP1572962.
DQ893410 - Synthetic construct clone IMAGE:100006040; FLH199487.01X; RZPDo839D0782D calcium/calmodulin-dependent protein kinase kinase 2, beta (CAMKK2) gene, encodes complete protein.
DQ896785 - Synthetic construct Homo sapiens clone IMAGE:100011245; FLH199393.01L; RZPDo839D0781D calcium/calmodulin-dependent protein kinase kinase 2, beta (CAMKK2) gene, encodes complete protein.
AF091074 - Homo sapiens clone 307 unknown mRNA, complete sequence.
AF101264 - Homo sapiens Ca2+/calmodulin-dependent kinase kinase mRNA, complete cds.
AF321385 - Homo sapiens CaMKK beta 2 isoform mRNA, complete cds.
AF287631 - Homo sapiens calcium/calmodulin-dependent protein kinase kinase b2 mRNA, complete cds.
AF425668 - Homo sapiens CAMKK beta protein (CAMKK2) mRNA, partial cds.
JD336603 - Sequence 317627 from Patent EP1572962.
JD443940 - Sequence 424964 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_CaCaMPathway - Ca++/ Calmodulin-dependent Protein Kinase Activation

-  Other Names for This Gene
  Alternate Gene Symbols: A8K7Q7, CAMKKB, ENST00000404169.1, ENST00000404169.2, ENST00000404169.3, ENST00000404169.4, ENST00000404169.5, ENST00000404169.6, ENST00000404169.7, KIAA0787, KKCC2_HUMAN, NM_001270485, O94883, Q8IUG2, Q8IUG3, Q8N3I4, Q8WY03, Q8WY04, Q8WY05, Q8WY06, Q96RP1, Q96RP2, Q96RR3, Q96RR4, Q9BWE9, Q9UER3, Q9UES2, Q9Y5N2, uc319cnn.1, uc319cnn.2
UCSC ID: ENST00000404169.8_9
RefSeq Accession: NM_001270485.2
Protein: Q96RR4 (aka KKCC2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.