Human Gene CAND1 (ENST00000545606.6_4) from GENCODE V47lift37
  Description: cullin associated and neddylation dissociated 1, transcript variant 1 (from RefSeq NM_018448.5)
Gencode Transcript: ENST00000545606.6_4
Gencode Gene: ENSG00000111530.13_10
Transcript (Including UTRs)
   Position: hg19 chr12:67,663,138-67,713,733 Size: 50,596 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg19 chr12:67,663,498-67,706,610 Size: 43,113 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:67,663,138-67,713,733)mRNA (may differ from genome)Protein (1230 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CAND1_HUMAN
DESCRIPTION: RecName: Full=Cullin-associated NEDD8-dissociated protein 1; AltName: Full=Cullin-associated and neddylation-dissociated protein 1; AltName: Full=TBP-interacting protein of 120 kDa A; Short=TBP-interacting protein 120A; AltName: Full=p120 CAND1;
FUNCTION: Enhances transcription from various types of promoters (By similarity). Regulatory protein that interferes with the assembly of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex and thereby down-regulates ubiquitination of target proteins. Prevents neddylation of CUL1 by physically blocking access to the neddylation site. Disrupts interactions between CUL1 and SKP1 and between CUL1 and F-box proteins.
SUBUNIT: Binds TBP (By similarity). Part of a complex that contains CUL1 and RBX1. Binds unneddylated CUL1, but cannot bind CUL1 once it has been neddylated. Binds CUL2, CUL3, CUL4A, CUL4B and CUL5.
INTERACTION: Q13616:CUL1; NbExp=18; IntAct=EBI-456077, EBI-359390; Q13617:CUL2; NbExp=3; IntAct=EBI-456077, EBI-456179; Q13618:CUL3; NbExp=2; IntAct=EBI-456077, EBI-456129; Q13619:CUL4A; NbExp=3; IntAct=EBI-456077, EBI-456106; Q13620:CUL4B; NbExp=3; IntAct=EBI-456077, EBI-456067;
SUBCELLULAR LOCATION: Nucleus (By similarity).
SIMILARITY: Belongs to the CAND family.
SIMILARITY: Contains 27 HEAT repeats.
SEQUENCE CAUTION: Sequence=BAA74852.2; Type=Erroneous initiation; Sequence=BAB55090.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CAND1
Diseases sorted by gene-association score: familial hypertension (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.38 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 394.92 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -181.60360-0.504 Picture PostScript Text
3' UTR -2176.977123-0.306 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR013932 - TATA-bd_TIP120

Pfam Domains:
PF08623 - TATA-binding protein interacting (TIP20)

SCOP Domains:
48371 - ARM repeat
48431 - Lipovitellin-phosvitin complex, superhelical domain
48464 - ENTH/VHS domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1U6G - X-ray MuPIT 4A0C - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q86VP6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0017025 TBP-class protein binding

Biological Process:
GO:0006879 cellular iron ion homeostasis
GO:0010265 SCF complex assembly
GO:0016567 protein ubiquitination
GO:0030154 cell differentiation
GO:0043086 negative regulation of catalytic activity
GO:0043312 neutrophil degranulation
GO:0043687 post-translational protein modification
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045899 positive regulation of RNA polymerase II transcriptional preinitiation complex assembly

Cellular Component:
GO:0000151 ubiquitin ligase complex
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0016020 membrane
GO:0031461 cullin-RING ubiquitin ligase complex
GO:0034774 secretory granule lumen
GO:0070062 extracellular exosome
GO:1904813 ficolin-1-rich granule lumen


-  Descriptions from all associated GenBank mRNAs
  AK292456 - Homo sapiens cDNA FLJ77762 complete cds, highly similar to Homo sapiens cullin-associated and neddylation-dissociated 1 (CAND1), mRNA.
AL136810 - Homo sapiens mRNA; cDNA DKFZp434G0222 (from clone DKFZp434G0222).
AK096010 - Homo sapiens cDNA FLJ38691 fis, clone KIDNE2001467, highly similar to Rattus norvegicus mRNA for TIP120.
JD230840 - Sequence 211864 from Patent EP1572962.
AB020636 - Homo sapiens KIAA0829 mRNA for KIAA0829 protein.
AK314358 - Homo sapiens cDNA, FLJ95126, Homo sapiens TBP-interacting protein (TIP120A), mRNA.
JD460689 - Sequence 441713 from Patent EP1572962.
BC050341 - Homo sapiens cullin-associated and neddylation-dissociated 1, mRNA (cDNA clone MGC:51033 IMAGE:5265409), complete cds.
JD423064 - Sequence 404088 from Patent EP1572962.
JD483208 - Sequence 464232 from Patent EP1572962.
JD068449 - Sequence 49473 from Patent EP1572962.
AB384533 - Synthetic construct DNA, clone: pF1KA0829, Homo sapiens CAND1 gene for cullin-associated NEDD8-dissociated protein 1, complete cds, without stop codon, in Flexi system.
EU832277 - Synthetic construct Homo sapiens clone HAIB:100067306; DKFZo008A0427 cullin-associated and neddylation-dissociated 1 protein (CAND1) gene, encodes complete protein.
EU832362 - Synthetic construct Homo sapiens clone HAIB:100067391; DKFZo004A0428 cullin-associated and neddylation-dissociated 1 protein (CAND1) gene, encodes complete protein.
BC026220 - Homo sapiens cullin-associated and neddylation-dissociated 1, mRNA (cDNA clone IMAGE:3456907), partial cds.
AK027783 - Homo sapiens cDNA FLJ14877 fis, clone PLACE1003044.
AK074922 - Homo sapiens cDNA FLJ90441 fis, clone NT2RP3001012, highly similar to TIP120 protein.
AL833880 - Homo sapiens mRNA; cDNA DKFZp434P1417 (from clone DKFZp434P1417).
AK027404 - Homo sapiens cDNA FLJ14498 fis, clone NT2RM1000055, highly similar to Rattus norvegicus mRNA for TIP120.
BC004232 - Homo sapiens cullin-associated and neddylation-dissociated 1, mRNA (cDNA clone IMAGE:3604022), partial cds.
AK001791 - Homo sapiens cDNA FLJ10929 fis, clone OVARC1000479, highly similar to Cullin-associated NEDD8-dissociated protein 1.
AK000976 - Homo sapiens cDNA FLJ10114 fis, clone HEMBA1002770, highly similar to Cullin-associated NEDD8-dissociated protein 1.
AL133560 - Homo sapiens mRNA; cDNA DKFZp434M1414 (from clone DKFZp434M1414).
AK129780 - Homo sapiens cDNA FLJ26269 fis, clone DMC05990.
JD434720 - Sequence 415744 from Patent EP1572962.
JD245157 - Sequence 226181 from Patent EP1572962.
JD101178 - Sequence 82202 from Patent EP1572962.
JD363885 - Sequence 344909 from Patent EP1572962.
JD292677 - Sequence 273701 from Patent EP1572962.
JD268294 - Sequence 249318 from Patent EP1572962.
JD038951 - Sequence 19975 from Patent EP1572962.
JD552252 - Sequence 533276 from Patent EP1572962.
JD231855 - Sequence 212879 from Patent EP1572962.
AK056140 - Homo sapiens cDNA FLJ31578 fis, clone NT2RI2001952.
JD404892 - Sequence 385916 from Patent EP1572962.
JD454132 - Sequence 435156 from Patent EP1572962.
JD376139 - Sequence 357163 from Patent EP1572962.
JD376140 - Sequence 357164 from Patent EP1572962.
JD098870 - Sequence 79894 from Patent EP1572962.
JD498027 - Sequence 479051 from Patent EP1572962.
JD498026 - Sequence 479050 from Patent EP1572962.
JD543964 - Sequence 524988 from Patent EP1572962.
JD543965 - Sequence 524989 from Patent EP1572962.
JD543966 - Sequence 524990 from Patent EP1572962.
JD542271 - Sequence 523295 from Patent EP1572962.
JD196386 - Sequence 177410 from Patent EP1572962.
JD143690 - Sequence 124714 from Patent EP1572962.
JD494940 - Sequence 475964 from Patent EP1572962.
JD529189 - Sequence 510213 from Patent EP1572962.
JD169301 - Sequence 150325 from Patent EP1572962.
JD388227 - Sequence 369251 from Patent EP1572962.
JD118367 - Sequence 99391 from Patent EP1572962.
JD550212 - Sequence 531236 from Patent EP1572962.
JD234014 - Sequence 215038 from Patent EP1572962.
JD292963 - Sequence 273987 from Patent EP1572962.
AK054945 - Homo sapiens cDNA FLJ30383 fis, clone BRACE2008102.
JD472512 - Sequence 453536 from Patent EP1572962.
JD472513 - Sequence 453537 from Patent EP1572962.
JD179178 - Sequence 160202 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q86VP6 (Reactome details) participates in the following event(s):

R-HSA-5691131 CANDI binds CUL1
R-HSA-8955241 CAND1 binds cytosolic CRL E3 ubiquitin ligases
R-HSA-8955289 COMMDs displace CAND1 from cytosolic CRL E3 ubiquitin ligase complexes
R-HSA-8955245 CAND1 binds CRL4 E3 ubiquitin ligase in the nucleus
R-HSA-8955285 COMMDs displace CAND1 from CRL4 E3 ubiquitin ligase complex
R-HSA-6798748 Exocytosis of secretory granule lumen proteins
R-HSA-6800434 Exocytosis of ficolin-rich granule lumen proteins
R-HSA-917937 Iron uptake and transport
R-HSA-8951664 Neddylation
R-HSA-382551 Transport of small molecules
R-HSA-597592 Post-translational protein modification
R-HSA-6798695 Neutrophil degranulation
R-HSA-392499 Metabolism of proteins
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B2RAU3, CAND1_HUMAN, ENST00000545606.1, ENST00000545606.2, ENST00000545606.3, ENST00000545606.4, ENST00000545606.5, KIAA0829, NM_018448, O94918, Q6PIY4, Q86VP6, Q8NDJ4, Q96JZ9, Q96T19, Q9BTC4, Q9H0G2, Q9P0H7, Q9UF85, TIP120, TIP120A, uc324woe.1, uc324woe.2
UCSC ID: ENST00000545606.6_4
RefSeq Accession: NM_018448.5
Protein: Q86VP6 (aka CAND1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.