Human Gene CBR1 (ENST00000290349.11_4) from GENCODE V47lift37
  Description: carbonyl reductase 1, transcript variant 1 (from RefSeq NM_001757.4)
Gencode Transcript: ENST00000290349.11_4
Gencode Gene: ENSG00000159228.13_7
Transcript (Including UTRs)
   Position: hg19 chr21:37,442,322-37,445,462 Size: 3,141 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr21:37,442,414-37,445,180 Size: 2,767 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr21:37,442,322-37,445,462)mRNA (may differ from genome)Protein (277 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CBR1_HUMAN
DESCRIPTION: RecName: Full=Carbonyl reductase [NADPH] 1; EC=1.1.1.184; AltName: Full=15-hydroxyprostaglandin dehydrogenase [NADP(+)]; EC=1.1.1.197; AltName: Full=NADPH-dependent carbonyl reductase 1; AltName: Full=Prostaglandin 9-ketoreductase; AltName: Full=Prostaglandin-E(2) 9-reductase; EC=1.1.1.189;
FUNCTION: NADPH-dependent reductase with broad substrate specificity. Catalyzes the reduction of a wide variety of carbonyl compounds including quinones, prostaglandins, menadione, plus various xenobiotics. Catalyzes the reduction of the antitumor anthracyclines doxorubicin and daunorubicin to the cardiotoxic compounds doxorubicinol and daunorubicinol. Can convert prostaglandin E2 to prostaglandin F2-alpha. Can bind glutathione, which explains its higher affinity for glutathione-conjugated substrates. Catalyzes the reduction of S-nitrosoglutathione.
CATALYTIC ACTIVITY: R-CHOH-R' + NADP(+) = R-CO-R' + NADPH.
CATALYTIC ACTIVITY: (5Z,13E)-(15S)-9-alpha,11-alpha,15- trihydroxyprosta-5,13-dienoate + NADP(+) = (5Z,13E)-(15S)-11- alpha,15-dihydroxy-9-oxoprosta-5,13-dienoate + NADPH.
CATALYTIC ACTIVITY: (13E)-(15S)-11-alpha,15-dihydroxy-9-oxoprost- 13-enoate + NADP(+) = (13E)-11-alpha-hydroxy-9,15-dioxoprost-13- enoate + NADPH.
ENZYME REGULATION: Inhibited by quercetin, rutenin and its derivatives.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=30 uM for S-nitrosoglutathione; KM=22 uM for menadione; KM=309 uM for prostaglandin E2; KM=173 uM for daunorubicin; KM=247 uM for NADPH;
SUBUNIT: Monomer.
SUBCELLULAR LOCATION: Cytoplasm.
SIMILARITY: Belongs to the short-chain dehydrogenases/reductases (SDR) family.
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/cbr1/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CBR1
Diseases sorted by gene-association score: retinitis pigmentosa 58 (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 65.31 RPKM in Small Intestine - Terminal Ileum
Total median expression: 1314.98 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -38.3092-0.416 Picture PostScript Text
3' UTR -52.20282-0.185 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002198 - DH_sc/Rdtase_SDR
IPR002347 - Glc/ribitol_DH
IPR016040 - NAD(P)-bd_dom
IPR020904 - Sc_DH/Rdtase_CS

Pfam Domains:
PF00106 - short chain dehydrogenase
PF08659 - KR domain
PF13561 - Enoyl-(Acyl carrier protein) reductase

SCOP Domains:
51735 - NAD(P)-binding Rossmann-fold domains
53686 - Tryptophan synthase beta subunit-like PLP-dependent enzymes
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1WMA - X-ray MuPIT 2PFG - X-ray MuPIT 3BHI - X-ray MuPIT 3BHJ - X-ray MuPIT 3BHM - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P16152
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004090 carbonyl reductase (NADPH) activity
GO:0016491 oxidoreductase activity
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
GO:0047021 15-hydroxyprostaglandin dehydrogenase (NADP+) activity
GO:0050221 prostaglandin-E2 9-reductase activity

Biological Process:
GO:0017144 drug metabolic process
GO:0019371 cyclooxygenase pathway
GO:0030855 epithelial cell differentiation
GO:0042373 vitamin K metabolic process
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome
GO:1903561 extracellular vesicle


-  Descriptions from all associated GenBank mRNAs
  AB124848 - Homo sapiens hCBR1 mRNA for carbonyl reductase 1, complete cds.
JD103437 - Sequence 84461 from Patent EP1572962.
AK294142 - Homo sapiens cDNA FLJ60474 complete cds, highly similar to Carbonyl reductase [NADPH] 1 (EC 1.1.1.184).
J04056 - Human carbonyl reductase mRNA, complete cds.
AK308691 - Homo sapiens cDNA, FLJ98732.
AK311219 - Homo sapiens cDNA, FLJ18261.
BC015640 - Homo sapiens carbonyl reductase 1, mRNA (cDNA clone MGC:23315 IMAGE:4642240), complete cds.
AK314879 - Homo sapiens cDNA, FLJ95780, Homo sapiens carbonyl reductase 1 (CBR1), mRNA.
BC002511 - Homo sapiens carbonyl reductase 1, mRNA (cDNA clone MGC:1920 IMAGE:3050837), complete cds.
GQ900926 - Homo sapiens clone HEL-T-38 epididymis secretory sperm binding protein mRNA, complete cds.
DQ892353 - Synthetic construct clone IMAGE:100004983; FLH187991.01X; RZPDo839F04150D carbonyl reductase 1 (CBR1) gene, encodes complete protein.
DQ895559 - Synthetic construct Homo sapiens clone IMAGE:100010019; FLH187987.01L; RZPDo839F04149D carbonyl reductase 1 (CBR1) gene, encodes complete protein.
KJ890839 - Synthetic construct Homo sapiens clone ccsbBroadEn_00233 CBR1 gene, encodes complete protein.
KR710384 - Synthetic construct Homo sapiens clone CCSBHm_00012091 CBR1 (CBR1) mRNA, encodes complete protein.
CR541708 - Homo sapiens full open reading frame cDNA clone RZPDo834G1028D for gene CBR1, carbonyl reductase 1; complete cds, without stopcodon.
BT019843 - Homo sapiens carbonyl reductase 1 mRNA, complete cds.
JD181449 - Sequence 162473 from Patent EP1572962.
JD528989 - Sequence 510013 from Patent EP1572962.
JD051818 - Sequence 32842 from Patent EP1572962.
JD224636 - Sequence 205660 from Patent EP1572962.
JD488556 - Sequence 469580 from Patent EP1572962.
JD566244 - Sequence 547268 from Patent EP1572962.
JD296322 - Sequence 277346 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P16152 (Reactome details) participates in the following event(s):

R-HSA-2161651 PGE2 is converted to PGF2a by CBR1
R-HSA-2162123 Synthesis of Prostaglandins (PG) and Thromboxanes (TX)
R-HSA-2142753 Arachidonic acid metabolism
R-HSA-8978868 Fatty acid metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: B2RBZ7, B4DFK7, CBR, CBR1 , CBR1_HUMAN, CRN, ENST00000290349.1, ENST00000290349.10, ENST00000290349.2, ENST00000290349.3, ENST00000290349.4, ENST00000290349.5, ENST00000290349.6, ENST00000290349.7, ENST00000290349.8, ENST00000290349.9, NM_001757, P16152, Q3LHW8, SDR21C1, uc317kup.1, uc317kup.2
UCSC ID: ENST00000290349.11_4
RefSeq Accession: NM_001757.4
Protein: P16152 (aka CBR1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.