Human Gene CD8A (ENST00000283635.8_12) from GENCODE V47lift37
  Description: CD8a molecule, transcript variant 1 (from RefSeq NM_001768.7)
Gencode Transcript: ENST00000283635.8_12
Gencode Gene: ENSG00000153563.17_17
Transcript (Including UTRs)
   Position: hg19 chr2:87,011,733-87,018,036 Size: 6,304 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr2:87,013,043-87,017,948 Size: 4,906 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:87,011,733-87,018,036)mRNA (may differ from genome)Protein (235 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CD8A_HUMAN
DESCRIPTION: RecName: Full=T-cell surface glycoprotein CD8 alpha chain; AltName: Full=T-lymphocyte differentiation antigen T8/Leu-2; AltName: CD_antigen=CD8a; Flags: Precursor;
FUNCTION: Identifies cytotoxic/suppressor T-cells that interact with MHC class I bearing targets. CD8 is thought to play a role in the process of T-cell mediated killing. CD8 alpha chains binds to class I MHC molecules alpha-3 domains.
SUBUNIT: In general heterodimer of an alpha and a beta chain linked by two disulfide bonds. Can also form homodimers. Shown to be expressed as heterodimer on thymocytes and as homodimer on peripheral blood T-lymphocytes. Interacts with the MHC class I HLA-A/B2M dimer. Interacts with LCK in a zinc-dependent manner.
SUBCELLULAR LOCATION: Isoform 1: Cell membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Isoform 2: Secreted.
PTM: All of the five most C-terminal cysteines form inter-chain disulfide bonds in dimers and higher multimers, while the four N- terminal cysteines do not (By similarity).
DISEASE: Defects in CD8A are a cause of familial CD8 deficiency (CD8 deficiency) [MIM:608957]. Familial CD8 deficiency is a novel autosomal recessive immunologic defect characterized by absence of CD8+ cells, leading to recurrent bacterial infections.
SIMILARITY: Contains 1 Ig-like V-type (immunoglobulin-like) domain.
WEB RESOURCE: Name=CD8Abase; Note=CD8A mutation db; URL="http://bioinf.uta.fi/CD8Abase/";
WEB RESOURCE: Name=Wikipedia; Note=CD8 entry; URL="http://en.wikipedia.org/wiki/CD8";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CD8A
Diseases sorted by gene-association score: cd8 deficiency, familial* (1579), primary cutaneous aggressive epidermotropic cd8+ t-cell lymphoma (19), inflammatory linear verrucous epidermal nevus (18), immune system organ benign neoplasm (11), thymus lipoma (11), specific bursitis often of occupational origin (9), olecranon bursitis (8), lymphoid interstitial pneumonia (7), metal allergy (7), xanthogranulomatous cholecystitis (7), intrinsic asthma (5), cryptogenic organizing pneumonia (5), intestinal obstruction (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 49.47 RPKM in Spleen
Total median expression: 119.03 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -33.9088-0.385 Picture PostScript Text
3' UTR -386.401310-0.295 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015468 - CD8_asu
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR013106 - Ig_V-set
IPR003596 - Ig_V-set_subgr

Pfam Domains:
PF07686 - Immunoglobulin V-set domain

SCOP Domains:
48726 - Immunoglobulin

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1AKJ - X-ray MuPIT 1CD8 - X-ray MuPIT 1Q69 - NMR MuPIT 2HP4 - X-ray MuPIT 3QZW - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P01732
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0015026 coreceptor activity
GO:0019901 protein kinase binding
GO:0042288 MHC class I protein binding

Biological Process:
GO:0002250 adaptive immune response
GO:0002376 immune system process
GO:0002456 T cell mediated immunity
GO:0006955 immune response
GO:0007166 cell surface receptor signaling pathway
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway
GO:0019882 antigen processing and presentation
GO:0042110 T cell activation
GO:0045065 cytotoxic T cell differentiation
GO:0050776 regulation of immune response

Cellular Component:
GO:0005576 extracellular region
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009897 external side of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0042101 T cell receptor complex
GO:0044853 plasma membrane raft


-  Descriptions from all associated GenBank mRNAs
  AK124156 - Homo sapiens cDNA FLJ42162 fis, clone THYMU2005303, highly similar to T-CELL SURFACE GLYCOPROTEIN CD8 ALPHA CHAIN PRECURSOR.
BC025715 - Homo sapiens CD8a molecule, mRNA (cDNA clone MGC:34614 IMAGE:5227906), complete cds.
AK097942 - Homo sapiens cDNA FLJ40623 fis, clone THYMU2013863, highly similar to T-cell surface glycoprotein CD8 alpha chain precursor.
LP880230 - Sequence 34 from Patent WO2017181111.
LP882059 - Sequence 1 from Patent WO2017181079.
LQ882852 - Sequence 1 from Patent WO2018160841.
M12824 - Human T-cell differentiation antigen Leu-2/T8 mRNA, partial cds.
JD098300 - Sequence 79324 from Patent EP1572962.
JD531124 - Sequence 512148 from Patent EP1572962.
JD575757 - Sequence 81 from Patent EP2831104.
JD171039 - Sequence 152063 from Patent EP1572962.
JD275058 - Sequence 256082 from Patent EP1572962.
JD240179 - Sequence 221203 from Patent EP1572962.
JD049825 - Sequence 30849 from Patent EP1572962.
JD117575 - Sequence 98599 from Patent EP1572962.
JD472775 - Sequence 453799 from Patent EP1572962.
JD038488 - Sequence 19512 from Patent EP1572962.
JD365521 - Sequence 346545 from Patent EP1572962.
M12828 - Homo sapiens T-cell surface protein T8 mRNA.
JD049769 - Sequence 30793 from Patent EP1572962.
JD300464 - Sequence 281488 from Patent EP1572962.
AY039664 - Homo sapiens mutant CD8 alpha antigen (CD8A) mRNA, complete cds.
AK300089 - Homo sapiens cDNA FLJ61164 complete cds, highly similar to T-cell surface glycoprotein CD8 alpha chain precursor.
JD164311 - Sequence 145335 from Patent EP1572962.
JD308545 - Sequence 289569 from Patent EP1572962.
DQ893323 - Synthetic construct clone IMAGE:100005953; FLH196164.01X; RZPDo839E06154D CD8a molecule (CD8A) gene, encodes complete protein.
DQ896638 - Synthetic construct Homo sapiens clone IMAGE:100011098; FLH196160.01L; RZPDo839E06153D CD8a molecule (CD8A) gene, encodes complete protein.
DQ896639 - Synthetic construct Homo sapiens clone IMAGE:100011099; FLH263665.01L; RZPDo839E07153D CD8a molecule (CD8A) gene, encodes complete protein.
LQ927224 - Sequence 1 from Patent WO2018191660.
MP202732 - Sequence 43 from Patent WO2019090263.
MB143790 - JP 2019515670-A/1: METHODS FOR MONITORING AND TREATING CANCER.
MB423114 - JP 2019521641-A/1: METHODS FOR MONITORING AND TREATING CANCER.
MP584502 - Sequence 1 from Patent WO2020081767.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_tcytotoxicPathway - T Cytotoxic Cell Surface Molecules
h_il17Pathway - IL 17 Signaling Pathway
h_stemPathway - Regulation of hematopoiesis by cytokines

Reactome (by CSHL, EBI, and GO)

Protein P01732 (Reactome details) participates in the following event(s):

R-HSA-198955 TCR complex interacts with peptide antigen-presenting MHC Class I
R-HSA-198933 Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B4DT80, CD8A_HUMAN, D6W5M8, ENST00000283635.1, ENST00000283635.2, ENST00000283635.3, ENST00000283635.4, ENST00000283635.5, ENST00000283635.6, ENST00000283635.7, MAL, NM_001768, P01732, Q13970, Q4ZG17, uc317kdb.1, uc317kdb.2
UCSC ID: ENST00000283635.8_12
RefSeq Accession: NM_001768.7
Protein: P01732 (aka CD8A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.