Human Gene CDC27 (ENST00000066544.8_11) from GENCODE V47lift37
  Description: cell division cycle 27, transcript variant 10 (from RefSeq NR_148340.2)
Gencode Transcript: ENST00000066544.8_11
Gencode Gene: ENSG00000004897.12_18
Transcript (Including UTRs)
   Position: hg19 chr17:45,195,069-45,266,661 Size: 71,593 Total Exon Count: 19 Strand: -
Coding Region
   Position: hg19 chr17:45,198,301-45,266,538 Size: 68,238 Coding Exon Count: 19 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:45,195,069-45,266,661)mRNA (may differ from genome)Protein (824 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CDC27_HUMAN
DESCRIPTION: RecName: Full=Cell division cycle protein 27 homolog; AltName: Full=Anaphase-promoting complex subunit 3; Short=APC3; AltName: Full=CDC27 homolog; Short=CDC27Hs; AltName: Full=H-NUC;
FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: The APC/C is composed of at least 12 subunits. Interacts with RB. Interacts with FAM168B/MANI (By similarity).
INTERACTION: Q12834:CDC20; NbExp=6; IntAct=EBI-994813, EBI-367462; P12830:CDH1; NbExp=2; IntAct=EBI-994813, EBI-727477; Q9UKT4:FBXO5; NbExp=2; IntAct=EBI-994813, EBI-852298; Q9UM11:FZR1; NbExp=8; IntAct=EBI-994813, EBI-724997; Q9UI95:MAD2L2; NbExp=2; IntAct=EBI-994813, EBI-77889; P16333:NCK1; NbExp=3; IntAct=EBI-994813, EBI-389883; P51955:NEK2; NbExp=2; IntAct=EBI-994813, EBI-633182; P60484:PTEN; NbExp=7; IntAct=EBI-994813, EBI-696162;
SUBCELLULAR LOCATION: Nucleus.
PTM: Phosphorylated. Phosphorylation on Ser-426 and Thr-446 occurs specifically during mitosis.
SIMILARITY: Belongs to the APC3/CDC27 family.
SIMILARITY: Contains 9 TPR repeats.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/cdc27/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CDC27
Diseases sorted by gene-association score: cervix carcinoma (3), breast cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D015655 1-Methyl-4-phenylpyridinium
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • C016403 2,4-dinitrotoluene
  • C023514 2,6-dinitrotoluene
  • C090942 4-(4-fluorophenyl)-2-(4-hydroxyphenyl)-5-(4-pyridyl)imidazole
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D000082 Acetaminophen
  • D016604 Aflatoxin B1
  • D000643 Ammonium Chloride
  • D001564 Benzo(a)pyrene
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.09 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 425.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -57.90123-0.471 Picture PostScript Text
3' UTR -790.803232-0.245 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026803 - CDC27
IPR001440 - TPR-1
IPR013026 - TPR-contain_dom
IPR011990 - TPR-like_helical
IPR013105 - TPR_2
IPR019734 - TPR_repeat

Pfam Domains:
PF00515 - Tetratricopeptide repeat
PF07719 - Tetratricopeptide repeat
PF12895 - Anaphase-promoting complex, cyclosome, subunit 3
PF13181 - Tetratricopeptide repeat
PF13414 - TPR repeat
PF13432 - Tetratricopeptide repeat

SCOP Domains:
81901 - HCP-like
48439 - Protein prenylyltransferase
48452 - TPR-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3T1N - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P30260
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0019903 protein phosphatase binding

Biological Process:
GO:0007091 metaphase/anaphase transition of mitotic cell cycle
GO:0008283 cell proliferation
GO:0016567 protein ubiquitination
GO:0031145 anaphase-promoting complex-dependent catabolic process
GO:0070979 protein K11-linked ubiquitination

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005680 anaphase-promoting complex
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005819 spindle
GO:0005829 cytosol
GO:0005876 spindle microtubule


-  Descriptions from all associated GenBank mRNAs
  LF384810 - JP 2014500723-A/192313: Polycomb-Associated Non-Coding RNAs.
S78234 - nuc2 homolog [human, fibroblasts, mRNA, 3320 nt].
BC011656 - Homo sapiens cell division cycle 27 homolog (S. cerevisiae), mRNA (cDNA clone MGC:12709 IMAGE:4301175), complete cds.
AK296881 - Homo sapiens cDNA FLJ57525 complete cds, highly similar to Cell division cycle protein 27 homolog.
U00001 - Human homologue of S. pombe nuc2+ and A. nidulans bimA.
KJ896579 - Synthetic construct Homo sapiens clone ccsbBroadEn_05973 CDC27 gene, encodes complete protein.
DQ892780 - Synthetic construct clone IMAGE:100005410; FLH189657.01X; RZPDo839H0774D cell division cycle 27 (CDC27) gene, encodes complete protein.
DQ896027 - Synthetic construct Homo sapiens clone IMAGE:100010487; FLH189653.01L; RZPDo839H0764D cell division cycle 27 (CDC27) gene, encodes complete protein.
AB384784 - Synthetic construct DNA, clone: pF1KB3312, Homo sapiens CDC27 gene for cell division cycle protein 27 homolog, complete cds, without stop codon, in Flexi system.
AK299342 - Homo sapiens cDNA FLJ56539 complete cds, highly similar to Cell division cycle protein 27 homolog.
MA620387 - JP 2018138019-A/192313: Polycomb-Associated Non-Coding RNAs.
LF328119 - JP 2014500723-A/135622: Polycomb-Associated Non-Coding RNAs.
LF328120 - JP 2014500723-A/135623: Polycomb-Associated Non-Coding RNAs.
JD027094 - Sequence 8118 from Patent EP1572962.
JD034082 - Sequence 15106 from Patent EP1572962.
LF328121 - JP 2014500723-A/135624: Polycomb-Associated Non-Coding RNAs.
JD028311 - Sequence 9335 from Patent EP1572962.
JD024669 - Sequence 5693 from Patent EP1572962.
LF328122 - JP 2014500723-A/135625: Polycomb-Associated Non-Coding RNAs.
LF328123 - JP 2014500723-A/135626: Polycomb-Associated Non-Coding RNAs.
JD095986 - Sequence 77010 from Patent EP1572962.
JD509147 - Sequence 490171 from Patent EP1572962.
LF328124 - JP 2014500723-A/135627: Polycomb-Associated Non-Coding RNAs.
JD264856 - Sequence 245880 from Patent EP1572962.
JD489697 - Sequence 470721 from Patent EP1572962.
JD507703 - Sequence 488727 from Patent EP1572962.
JD553063 - Sequence 534087 from Patent EP1572962.
JD296397 - Sequence 277421 from Patent EP1572962.
LF328125 - JP 2014500723-A/135628: Polycomb-Associated Non-Coding RNAs.
JD475407 - Sequence 456431 from Patent EP1572962.
JD320349 - Sequence 301373 from Patent EP1572962.
LF328126 - JP 2014500723-A/135629: Polycomb-Associated Non-Coding RNAs.
JD023831 - Sequence 4855 from Patent EP1572962.
JD021042 - Sequence 2066 from Patent EP1572962.
MA563696 - JP 2018138019-A/135622: Polycomb-Associated Non-Coding RNAs.
MA563697 - JP 2018138019-A/135623: Polycomb-Associated Non-Coding RNAs.
MA563698 - JP 2018138019-A/135624: Polycomb-Associated Non-Coding RNAs.
MA563699 - JP 2018138019-A/135625: Polycomb-Associated Non-Coding RNAs.
MA563700 - JP 2018138019-A/135626: Polycomb-Associated Non-Coding RNAs.
MA563701 - JP 2018138019-A/135627: Polycomb-Associated Non-Coding RNAs.
MA563702 - JP 2018138019-A/135628: Polycomb-Associated Non-Coding RNAs.
MA563703 - JP 2018138019-A/135629: Polycomb-Associated Non-Coding RNAs.
LF328127 - JP 2014500723-A/135630: Polycomb-Associated Non-Coding RNAs.
JD446204 - Sequence 427228 from Patent EP1572962.
LF328129 - JP 2014500723-A/135632: Polycomb-Associated Non-Coding RNAs.
LF328130 - JP 2014500723-A/135633: Polycomb-Associated Non-Coding RNAs.
CU679998 - Synthetic construct Homo sapiens gateway clone IMAGE:100020474 5' read CDC27 mRNA.
LF328131 - JP 2014500723-A/135634: Polycomb-Associated Non-Coding RNAs.
LF328132 - JP 2014500723-A/135635: Polycomb-Associated Non-Coding RNAs.
DQ786193 - Homo sapiens clone HLS_IMAGE_109708 mRNA sequence.
JD078863 - Sequence 59887 from Patent EP1572962.
JD250379 - Sequence 231403 from Patent EP1572962.
JD059773 - Sequence 40797 from Patent EP1572962.
JD219196 - Sequence 200220 from Patent EP1572962.
MA563704 - JP 2018138019-A/135630: Polycomb-Associated Non-Coding RNAs.
MA563706 - JP 2018138019-A/135632: Polycomb-Associated Non-Coding RNAs.
MA563707 - JP 2018138019-A/135633: Polycomb-Associated Non-Coding RNAs.
MA563708 - JP 2018138019-A/135634: Polycomb-Associated Non-Coding RNAs.
MA563709 - JP 2018138019-A/135635: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P30260 (Reactome details) participates in the following event(s):

R-HSA-141423 Binding of the MCC complex to the APC/C complex
R-HSA-174070 Association of Cdh1 with the APC/C
R-HSA-174224 Dissociation of Cdc20 from APC/C complex
R-HSA-174119 Free APC/C phosphorylated by Plk1
R-HSA-174132 Free APC/C phosphorylated by Cyclin B:Cdc2
R-HSA-174139 Dissociation of phospho-Cdh1 from the APC/C complex
R-HSA-174171 Association of Cyclin A with the APC/C
R-HSA-174238 Activation of APC/C:Cdc20 by dissociation of Cdc20:phospho-APC/C from Cdc20:phospho-APC/C:Mad2:Bub3:BubR1
R-HSA-179410 Association of Nek2A with MCC:APC/C
R-HSA-174120 Association of Cyclin B:Cdc2 with Cdc20:APC/C complex
R-HSA-174121 Association of Securin with Cdc20:APC/C complex
R-HSA-174088 Association of cell cycle proteins with the APC/C:Cdh1 complex
R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-983147 Release of E3 from polyubiquitinated substrate
R-HSA-174057 Multiubiquitination of APC/C-associated Cdh1
R-HSA-188371 Association of Cyclin A:Cdk2 with Cdh1
R-HSA-3788708 CDKN1A (p21) prevents association of Cyclin A:Cdk2 with Cdh1
R-HSA-3788725 Cdh1:APC/C complex binds EHMT1:EHMT2
R-HSA-174104 Ubiquitination of Cyclin A by APC/C:Cdc20 complex
R-HSA-179417 Multiubiquitination of Nek2A
R-HSA-174227 Ubiquitination of Cyclin B by phospho-APC/C:Cdc20 complex
R-HSA-174144 Ubiquitination of Securin by phospho-APC/C:Cdc20 complex
R-HSA-174195 Ubiquitination of cell cycle proteins targeted by the APC/C:Cdh1complex
R-HSA-69015 Cytoplasmic phosphorylated Cdc6 is ubiquitinated by the anaphase-promoting complex
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-174079 Phosphorylation of Cdh1 by Cyclin A:Cdk2
R-HSA-3788705 CDKN1A (p21) prevents phosphorylation of Cdh1 by Cyclin A:Cdk2
R-HSA-3788724 Cdh1:APC/C ubiquitinates EHMT1 and EHMT2
R-HSA-141430 Inactivation of APC/C via direct inhibition of the APC/C complex
R-HSA-176407 Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase
R-HSA-176412 Phosphorylation of the APC/C
R-HSA-174084 Autodegradation of Cdh1 by Cdh1:APC/C
R-HSA-176408 Regulation of APC/C activators between G1/S and early anaphase
R-HSA-174184 Cdc20:Phospho-APC/C mediated degradation of Cyclin A
R-HSA-176409 APC/C:Cdc20 mediated degradation of mitotic proteins
R-HSA-179409 APC-Cdc20 mediated degradation of Nek2A
R-HSA-174048 APC/C:Cdc20 mediated degradation of Cyclin B
R-HSA-174154 APC/C:Cdc20 mediated degradation of Securin
R-HSA-2467813 Separation of Sister Chromatids
R-HSA-174178 APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1
R-HSA-141405 Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components
R-HSA-174143 APC/C-mediated degradation of cell cycle proteins
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-176814 Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins
R-HSA-2559582 Senescence-Associated Secretory Phenotype (SASP)
R-HSA-179419 APC:Cdc20 mediated degradation of cell cycle proteins prior to satisfation of the cell cycle checkpoint
R-HSA-68882 Mitotic Anaphase
R-HSA-69017 CDK-mediated phosphorylation and removal of Cdc6
R-HSA-69618 Mitotic Spindle Checkpoint
R-HSA-453276 Regulation of mitotic cell cycle
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-2559583 Cellular Senescence
R-HSA-2555396 Mitotic Metaphase and Anaphase
R-HSA-69052 Switching of origins to a post-replicative state
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-1280218 Adaptive Immune System
R-HSA-2262752 Cellular responses to stress
R-HSA-68886 M Phase
R-HSA-69239 Synthesis of DNA
R-HSA-1640170 Cell Cycle
R-HSA-168256 Immune System
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-69242 S Phase
R-HSA-69306 DNA Replication

-  Other Names for This Gene
  Alternate Gene Symbols: ANAPC3, CDC27_HUMAN, D0S1430E, D17S978E, ENST00000066544.1, ENST00000066544.2, ENST00000066544.3, ENST00000066544.4, ENST00000066544.5, ENST00000066544.6, ENST00000066544.7, G3V1C4, NR_148340, P30260, Q16349, Q96F35, uc317cao.1, uc317cao.2
UCSC ID: ENST00000066544.8_11
RefSeq Accession: NM_001256.6
Protein: P30260 (aka CDC27_HUMAN or CC27_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.