Human Gene CDCA2 (ENST00000330560.8_9) from GENCODE V47lift37
  Description: cell division cycle associated 2, transcript variant 1 (from RefSeq NM_152562.4)
Gencode Transcript: ENST00000330560.8_9
Gencode Gene: ENSG00000184661.14_11
Transcript (Including UTRs)
   Position: hg19 chr8:25,316,749-25,365,427 Size: 48,679 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg19 chr8:25,317,756-25,365,254 Size: 47,499 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:25,316,749-25,365,427)mRNA (may differ from genome)Protein (1023 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CDCA2_HUMAN
DESCRIPTION: RecName: Full=Cell division cycle-associated protein 2; AltName: Full=Recruits PP1 onto mitotic chromatin at anaphase protein; Short=Repo-Man;
FUNCTION: Regulator of chromosome structure during mitosis required for condensin-depleted chromosomes to retain their compact architecture through anaphase. Acts by mediating the recruitment of phopsphatase PP1-gamma subunit (PPP1CC) to chromatin at anaphase and into the following interphase. At anaphase onset, its association with chromatin targets a pool of PPP1CC to dephosphorylate substrates.
SUBUNIT: Interacts with PPP1CC.
SUBCELLULAR LOCATION: Nucleus. Note=Excluded from the nucleolus. Present in nucleoplasm throughout the G1, S and G2 stages of the cell cycle. During M phase, it becomes diffuse throughout the cell as the nuclear membrane breaks down, and faintly accumulates later on metaphase chromatin. As the cell progresses to anaphase, it accumulates on chromatin.
TISSUE SPECIFICITY: Ubiquitously expressed.
PTM: Phosphorylated by CDK1. May regulate its subcellular location.
SEQUENCE CAUTION: Sequence=AAH36214.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAC05374.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=CAH10577.1; Type=Erroneous translation; Note=Wrong choice of CDS;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.56 RPKM in Testis
Total median expression: 36.59 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -122.00241-0.506 Picture PostScript Text
3' UTR -27.30173-0.158 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026149 - Cdca2

Pfam Domains:
PF15276 - Protein phosphatase 1 binding

ModBase Predicted Comparative 3D Structure on Q69YH5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0007049 cell cycle
GO:0035307 positive regulation of protein dephosphorylation
GO:0051301 cell division

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK292505 - Homo sapiens cDNA FLJ78763 complete cds.
AK299278 - Homo sapiens cDNA FLJ61606 complete cds, highly similar to Homo sapiens cell division cycle associated 2 (CDCA2), mRNA.
AL833627 - Homo sapiens mRNA; cDNA DKFZp686P1573 (from clone DKFZp686P1573).
BC015691 - Homo sapiens cell division cycle associated 2, mRNA (cDNA clone IMAGE:4810400), partial cds.
JD519049 - Sequence 500073 from Patent EP1572962.
BC104450 - Homo sapiens cell division cycle associated 2, mRNA (cDNA clone IMAGE:40028453), complete cds.
BC104451 - Homo sapiens cell division cycle associated 2, mRNA (cDNA clone IMAGE:40028458), complete cds.
BC036214 - Homo sapiens cell division cycle associated 2, mRNA (cDNA clone MGC:39649 IMAGE:5267276), complete cds.
AL833396 - Homo sapiens mRNA; cDNA DKFZp762K099 (from clone DKFZp762K099).
BX649008 - Homo sapiens mRNA; cDNA DKFZp779I0613 (from clone DKFZp779I0613).
AK092164 - Homo sapiens cDNA FLJ34845 fis, clone NT2NE2011221, highly similar to Homo sapiens cell division cycle associated 2 (CDCA2), mRNA.
AX747387 - Sequence 912 from Patent EP1308459.
JD348520 - Sequence 329544 from Patent EP1572962.
AK098670 - Homo sapiens cDNA FLJ25804 fis, clone TST07178.
BC085609 - Homo sapiens cell division cycle associated 2, mRNA (cDNA clone IMAGE:30707254), partial cds.
BC063651 - Homo sapiens cell division cycle associated 2, mRNA (cDNA clone IMAGE:4803608), partial cds.
LF335055 - JP 2014500723-A/142558: Polycomb-Associated Non-Coding RNAs.
LF210136 - JP 2014500723-A/17639: Polycomb-Associated Non-Coding RNAs.
LF335054 - JP 2014500723-A/142557: Polycomb-Associated Non-Coding RNAs.
LF335051 - JP 2014500723-A/142554: Polycomb-Associated Non-Coding RNAs.
LF335050 - JP 2014500723-A/142553: Polycomb-Associated Non-Coding RNAs.
LF335049 - JP 2014500723-A/142552: Polycomb-Associated Non-Coding RNAs.
MA570632 - JP 2018138019-A/142558: Polycomb-Associated Non-Coding RNAs.
MA445713 - JP 2018138019-A/17639: Polycomb-Associated Non-Coding RNAs.
MA570631 - JP 2018138019-A/142557: Polycomb-Associated Non-Coding RNAs.
MA570628 - JP 2018138019-A/142554: Polycomb-Associated Non-Coding RNAs.
MA570627 - JP 2018138019-A/142553: Polycomb-Associated Non-Coding RNAs.
MA570626 - JP 2018138019-A/142552: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: CDCA2_HUMAN, ENST00000330560.1, ENST00000330560.2, ENST00000330560.3, ENST00000330560.4, ENST00000330560.5, ENST00000330560.6, ENST00000330560.7, NM_152562, Q3SX74, Q4G0W0, Q5RKN0, Q69YH5, Q69YI4, Q6P464, Q8N7C1, uc317szu.1, uc317szu.2
UCSC ID: ENST00000330560.8_9
RefSeq Accession: NM_152562.4
Protein: Q69YH5 (aka CDCA2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.