Human Gene CDCA5 (ENST00000275517.8_10) from GENCODE V47lift37
  Description: cell division cycle associated 5 (from RefSeq NM_080668.4)
Gencode Transcript: ENST00000275517.8_10
Gencode Gene: ENSG00000146670.10_16
Transcript (Including UTRs)
   Position: hg19 chr11:64,844,925-64,851,512 Size: 6,588 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr11:64,846,579-64,851,450 Size: 4,872 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:64,844,925-64,851,512)mRNA (may differ from genome)Protein (252 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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MGIOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CDCA5_HUMAN
DESCRIPTION: RecName: Full=Sororin; AltName: Full=Cell division cycle-associated protein 5; AltName: Full=p35;
FUNCTION: Regulator of sister chromatid cohesion in mitosis stabilizing cohesin complex association with chromatin. May antagonize the action of WAPAL which stimulates cohesin dissociation from chromatin. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair. Required for efficient DNA double-stranded break repair.
SUBUNIT: Interacts with the APC/C complex (By similarity). Interacts with the chromatin-bound cohesin complex; the interaction is indirect, occurs after DNA replication and requires acetylation of the cohesin component SMC3. Interacts (via the FGF motif) with PDS5A and PDS5B; the interaction is direct and prevents the interaction of PDS5A with WAPAL.
INTERACTION: Q29RF7:PDS5A; NbExp=2; IntAct=EBI-718805, EBI-1175454;
SUBCELLULAR LOCATION: Nucleus. Chromosome. Cytoplasm. Note=Associates with nuclear chromatin from S phase until metaphase and is released in the cytoplasm upon nuclear envelope breakdown.
DOMAIN: The KEN box is required for the association with the APC/C complex (By similarity).
PTM: Phosphorylated. Phosphorylation, as cells enter mitosis, disrupts the interaction with PDS5A and relieves the inhibition of WAPAL by CDCA5.
PTM: Ubiquitinated by the APC/C complex in G1, leading to its degradation (Probable).
MISCELLANEOUS: Named sororin after the Latin word 'soror', which means 'sister', because of its critical role in sister chromatid cohesion.
SIMILARITY: Belongs to the sororin family.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 25.69 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 86.96 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -26.9062-0.434 Picture PostScript Text
3' UTR -611.401654-0.370 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018605 - Sororin

Pfam Domains:
PF09666 - Sororin protein

ModBase Predicted Comparative 3D Structure on Q96FF9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003682 chromatin binding
GO:0005515 protein binding

Biological Process:
GO:0000278 mitotic cell cycle
GO:0006302 double-strand break repair
GO:0007049 cell cycle
GO:0007064 mitotic sister chromatid cohesion
GO:0007076 mitotic chromosome condensation
GO:0007080 mitotic metaphase plate congression
GO:0031536 positive regulation of exit from mitosis
GO:0051301 cell division
GO:0071922 regulation of cohesin loading

Cellular Component:
GO:0000775 chromosome, centromeric region
GO:0000785 chromatin
GO:0000790 nuclear chromatin
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0008278 cohesin complex


-  Descriptions from all associated GenBank mRNAs
  AL832526 - Homo sapiens mRNA; cDNA DKFZp547C0716 (from clone DKFZp547C0716).
AK093670 - Homo sapiens cDNA FLJ36351 fis, clone THYMU2007146, highly similar to Sororin (Cell division cycle-associated protein 5).
AX748254 - Sequence 1779 from Patent EP1308459.
BC011000 - Homo sapiens cell division cycle associated 5, mRNA (cDNA clone MGC:16386 IMAGE:3938081), complete cds.
LF385273 - JP 2014500723-A/192776: Polycomb-Associated Non-Coding RNAs.
JD369235 - Sequence 350259 from Patent EP1572962.
JD186068 - Sequence 167092 from Patent EP1572962.
JD199796 - Sequence 180820 from Patent EP1572962.
JD367383 - Sequence 348407 from Patent EP1572962.
JD306615 - Sequence 287639 from Patent EP1572962.
JD521677 - Sequence 502701 from Patent EP1572962.
JD468800 - Sequence 449824 from Patent EP1572962.
JD057438 - Sequence 38462 from Patent EP1572962.
JD384570 - Sequence 365594 from Patent EP1572962.
JD087407 - Sequence 68431 from Patent EP1572962.
JD327121 - Sequence 308145 from Patent EP1572962.
JD150993 - Sequence 132017 from Patent EP1572962.
DQ577370 - Homo sapiens piRNA piR-45482, complete sequence.
HV558813 - WO 2011161960-A/8: C1orf59 for Target Genes of Cancer Therapy and Diagnosis.
JD560596 - Sequence 541620 from Patent EP1572962.
JD541188 - Sequence 522212 from Patent EP1572962.
JD078132 - Sequence 59156 from Patent EP1572962.
JD067086 - Sequence 48110 from Patent EP1572962.
JD140927 - Sequence 121951 from Patent EP1572962.
JD291087 - Sequence 272111 from Patent EP1572962.
DQ581336 - Homo sapiens piRNA piR-49448, complete sequence.
HV558814 - WO 2011161960-A/9: C1orf59 for Target Genes of Cancer Therapy and Diagnosis.
JD514273 - Sequence 495297 from Patent EP1572962.
JD218215 - Sequence 199239 from Patent EP1572962.
JD555314 - Sequence 536338 from Patent EP1572962.
JD383787 - Sequence 364811 from Patent EP1572962.
AK291490 - Homo sapiens cDNA FLJ77311 complete cds, highly similar to Homo sapiens cell division cycle associated 5 (CDCA5), mRNA.
JD109030 - Sequence 90054 from Patent EP1572962.
JD233906 - Sequence 214930 from Patent EP1572962.
JD371126 - Sequence 352150 from Patent EP1572962.
JD178070 - Sequence 159094 from Patent EP1572962.
JD209065 - Sequence 190089 from Patent EP1572962.
JD385625 - Sequence 366649 from Patent EP1572962.
JD227365 - Sequence 208389 from Patent EP1572962.
JD227301 - Sequence 208325 from Patent EP1572962.
JD547792 - Sequence 528816 from Patent EP1572962.
JD136616 - Sequence 117640 from Patent EP1572962.
JD136615 - Sequence 117639 from Patent EP1572962.
JD116788 - Sequence 97812 from Patent EP1572962.
JD241458 - Sequence 222482 from Patent EP1572962.
JD336732 - Sequence 317756 from Patent EP1572962.
JD493958 - Sequence 474982 from Patent EP1572962.
JD088294 - Sequence 69318 from Patent EP1572962.
JD161451 - Sequence 142475 from Patent EP1572962.
JD322819 - Sequence 303843 from Patent EP1572962.
KJ895246 - Synthetic construct Homo sapiens clone ccsbBroadEn_04640 CDCA5 gene, encodes complete protein.
DQ893251 - Synthetic construct clone IMAGE:100005881; FLH195628.01X; RZPDo839E06152D cell division cycle associated 5 (CDCA5) gene, encodes complete protein.
DQ896580 - Synthetic construct Homo sapiens clone IMAGE:100011040; FLH195624.01L; RZPDo839E06151D cell division cycle associated 5 (CDCA5) gene, encodes complete protein.
LF344489 - JP 2014500723-A/151992: Polycomb-Associated Non-Coding RNAs.
MA620850 - JP 2018138019-A/192776: Polycomb-Associated Non-Coding RNAs.
MA580066 - JP 2018138019-A/151992: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q96FF9 (Reactome details) participates in the following event(s):

R-HSA-2468041 CDCA5 (Sororin) enables cohesion of sister chromosomal arms
R-HSA-2473151 CDCA5 (Sororin) enables cohesion of sister centromeres
R-HSA-2467794 Resolution of sister chromatids
R-HSA-2467811 Separation of sister chromatids
R-HSA-1638821 PP2A-B56 dephosphorylates centromeric cohesin
R-HSA-1638803 Phosphorylation of cohesin by PLK1 at centromeres
R-HSA-2467809 ESPL1 (Separase) cleaves centromeric cohesin
R-HSA-2468287 CDK1 phosphorylates CDCA5 (Sororin) at centromeres
R-HSA-2468293 CDK1 phosphorylates CDCA5 (Sororin) at chromosomal arms
R-HSA-2466068 Phosphorylation of cohesin by PLK1 at chromosomal arms
R-HSA-2468052 Establishment of Sister Chromatid Cohesion
R-HSA-2500257 Resolution of Sister Chromatid Cohesion
R-HSA-2467813 Separation of Sister Chromatids
R-HSA-69242 S Phase
R-HSA-68877 Mitotic Prometaphase
R-HSA-68882 Mitotic Anaphase
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-68886 M Phase
R-HSA-2555396 Mitotic Metaphase and Anaphase
R-HSA-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: A8K625, CDCA5_HUMAN, ENST00000275517.1, ENST00000275517.2, ENST00000275517.3, ENST00000275517.4, ENST00000275517.5, ENST00000275517.6, ENST00000275517.7, NM_080668, Q96FF9, uc317jid.1, uc317jid.2
UCSC ID: ENST00000275517.8_10
RefSeq Accession: NM_080668.4
Protein: Q96FF9 (aka CDCA5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.