Human Gene CDS1 (ENST00000295887.6_4) from GENCODE V47lift37
  Description: CDP-diacylglycerol synthase 1 (from RefSeq NM_001263.4)
Gencode Transcript: ENST00000295887.6_4
Gencode Gene: ENSG00000163624.6_7
Transcript (Including UTRs)
   Position: hg19 chr4:85,504,280-85,572,487 Size: 68,208 Total Exon Count: 13 Strand: +
Coding Region
   Position: hg19 chr4:85,504,555-85,569,839 Size: 65,285 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:85,504,280-85,572,487)mRNA (may differ from genome)Protein (461 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CDS1_HUMAN
DESCRIPTION: RecName: Full=Phosphatidate cytidylyltransferase 1; EC=2.7.7.41; AltName: Full=CDP-DAG synthase 1; AltName: Full=CDP-DG synthase 1; AltName: Full=CDP-diacylglycerol synthase 1; Short=CDS 1; AltName: Full=CDP-diglyceride pyrophosphorylase 1; AltName: Full=CDP-diglyceride synthase 1; AltName: Full=CTP:phosphatidate cytidylyltransferase 1;
FUNCTION: Provides CDP-diacylglycerol an important precursor for the synthesis of phosphatidylinositol (PtdIns), phosphatidylglycerol, and cardiolipin. Overexpression may amplify cellular signaling responses from cytokines. May also play an important role in the signal transduction mechanism of retina and neural cells.
CATALYTIC ACTIVITY: CTP + phosphatidate = diphosphate + CDP- diacylglycerol.
COFACTOR: Magnesium (By similarity).
PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 3/3.
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Multi-pass membrane protein (By similarity). Note=Cytoplasmic aspect of the endoplasmic reticulum (By similarity).
TISSUE SPECIFICITY: Expressed in adult tissues such as placenta, brain, small intestine, ovary, testis and prostate. Highly expressed in fetal kidney, lung and brain. Lower level in fetal liver.
SIMILARITY: Belongs to the CDS family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.58 RPKM in Esophagus - Mucosa
Total median expression: 216.48 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -155.60275-0.566 Picture PostScript Text
3' UTR -633.302648-0.239 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000374 - PC_trans
IPR016720 - PC_Trfase_euk

Pfam Domains:
PF01148 - Cytidylyltransferase family

ModBase Predicted Comparative 3D Structure on Q92903
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details  Gene DetailsGene Details
Gene SorterGene Sorter  Gene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004142 diacylglycerol cholinephosphotransferase activity
GO:0004605 phosphatidate cytidylyltransferase activity
GO:0016740 transferase activity
GO:0016772 transferase activity, transferring phosphorus-containing groups
GO:0016779 nucleotidyltransferase activity

Biological Process:
GO:0006629 lipid metabolic process
GO:0006655 phosphatidylglycerol biosynthetic process
GO:0006657 CDP-choline pathway
GO:0006661 phosphatidylinositol biosynthetic process
GO:0007165 signal transduction
GO:0007602 phototransduction
GO:0008654 phospholipid biosynthetic process
GO:0016024 CDP-diacylglycerol biosynthetic process

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  U65887 - Human CDP-diacylglycerol synthase mRNA, complete cds.
JD399589 - Sequence 380613 from Patent EP1572962.
AK314245 - Homo sapiens cDNA, FLJ94990, Homo sapiens CDP-diacylglycerol synthase (phosphatidatecytidylyltransferase) 1 (CDS1), mRNA.
U60808 - Human CDP-diacylglycerol synthase (CDS) mRNA, complete cds.
JD055782 - Sequence 36806 from Patent EP1572962.
BC074833 - Homo sapiens CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1, mRNA (cDNA clone MGC:104094 IMAGE:30915545), complete cds.
BC074881 - Homo sapiens CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1, mRNA (cDNA clone MGC:103857 IMAGE:30915239), complete cds.
JD431178 - Sequence 412202 from Patent EP1572962.
JD291541 - Sequence 272565 from Patent EP1572962.
JD476087 - Sequence 457111 from Patent EP1572962.
KJ890892 - Synthetic construct Homo sapiens clone ccsbBroadEn_00286 CDS1 gene, encodes complete protein.
AY312584 - Homo sapiens CDP-diacylglycerol synthase 1 mRNA, partial sequence, alternatively spliced.
JD170670 - Sequence 151694 from Patent EP1572962.
JD046359 - Sequence 27383 from Patent EP1572962.
JD501183 - Sequence 482207 from Patent EP1572962.
JD304709 - Sequence 285733 from Patent EP1572962.
JD563335 - Sequence 544359 from Patent EP1572962.
JD500747 - Sequence 481771 from Patent EP1572962.
JD534995 - Sequence 516019 from Patent EP1572962.
AK026697 - Homo sapiens cDNA: FLJ23044 fis, clone LNG02454.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-5667 - CDP-diacylglycerol biosynthesis

BioCarta from NCI Cancer Genome Anatomy Project
h_atrbrcaPathway - Role of BRCA1, BRCA2 and ATR in Cancer Susceptibility
h_g2Pathway - Cell Cycle: G2/M Checkpoint
h_atmPathway - ATM Signaling Pathway
h_plk3Pathway - Regulation of cell cycle progression by Plk3

Reactome (by CSHL, EBI, and GO)

Protein Q92903 (Reactome details) participates in the following event(s):

R-HSA-1483121 PA is converted to CDP-DAG by CDS1
R-HSA-1483226 Synthesis of PI
R-HSA-1483206 Glycerophospholipid biosynthesis
R-HSA-1483257 Phospholipid metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: B2RAL5, CDS, CDS1 , CDS1_HUMAN, ENST00000295887.1, ENST00000295887.2, ENST00000295887.3, ENST00000295887.4, ENST00000295887.5, NM_001263, O00163, Q92903, uc317loz.1, uc317loz.2
UCSC ID: ENST00000295887.6_4
RefSeq Accession: NM_001263.4
Protein: Q92903 (aka CDS1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.