Human Gene CDSN (ENST00000376288.3_7) from GENCODE V47lift37
  Description: corneodesmosin (from RefSeq NM_001264.5)
Gencode Transcript: ENST00000376288.3_7
Gencode Gene: ENSG00000204539.4_9
Transcript (Including UTRs)
   Position: hg19 chr6:31,082,864-31,088,223 Size: 5,360 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr6:31,083,802-31,088,196 Size: 4,395 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:31,082,864-31,088,223)mRNA (may differ from genome)Protein (529 aa)
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CDSN_HUMAN
DESCRIPTION: RecName: Full=Corneodesmosin; AltName: Full=S protein; Flags: Precursor;
FUNCTION: Important for the epidermal barrier integrity.
SUBCELLULAR LOCATION: Secreted. Note=Found in corneodesmosomes, the intercellular structures that are involved in desquamation.
TISSUE SPECIFICITY: Exclusively expressed in skin.
POLYMORPHISM: Genetic variation in CDSN may be associated with susceptibility to psoriasis [MIM:177900]. Various CDSN alleles are known including alleles 1.11, 1.21, 1.31, 1.32, 1.41, 1.42, 1.43, 1.51, 1.52, 2.11, 2.21, 2.22 and 2.23.
DISEASE: Defects in CDSN are the cause of hypotrichosis type 2 (HYPT2) [MIM:146520]. A condition characterized by the presence of less than the normal amount of hair. Affected individuals have normal hair in early childhood but experience progressive hair loss limited to the scalp beginning in the middle of the first decade and almost complete baldness by the third decade. Body hair, beard, eyebrows, axillary hair, teeth, and nails develop normally.
DISEASE: Defects in CDSN are a cause of peeling skin syndrome (PSS) [MIM:270300]; also known as peeling skin syndrome or deciduous skin or keratolysis exfoliativa congenita. A genodermatosis characterized by generalized, continuous shedding of the outer layers of the epidermis. Two main PSS subtypes have been suggested. Patients with non-inflammatory PSS (type A) manifest white scaling, with painless and easy removal of the skin, irritation when in contact with water, dust and sand, and no history of erythema, pruritis or atopy. Inflammatory PSS (type B) is associated with generalized erythema, pruritus and atopy. It is an ichthyosiform erythroderma characterized by lifelong patchy peeling of the entire skin with onset at birth or shortly after. Several patients have been reported with high IgE levels. Note=CDNS mutations are responsible for generalized, inflammatory peeling skin syndrome type B (PubMed:20691404).
SEQUENCE CAUTION: Sequence=AAA21321.1; Type=Frameshift; Positions=501; Sequence=BAB63316.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAC54948.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CDSN
Diseases sorted by gene-association score: peeling skin syndrome 1* (1269), hypotrichosis 2* (1018), peeling skin syndrome* (548), hypotrichosis simplex of the scalp* (369), psoriasis (45), salivary gland disease (17), primary cerebellar degeneration (16), thymus lymphoma (16), chronic interstitial cystitis (15), hypotrichosis (13), mononeuritis of upper limb and mononeuritis multiplex (11), guttate psoriasis (10), mononeuritis multiplex (9), plexiform schwannoma (9), xerophthalmia (8), skin disease (8), atopy (8), parotid disease (8), psoriasis susceptibility 1 (8), ascending colon cancer (7), hypotrichosis 1 (7), hypotrichosis simplex (7), middle lobe syndrome (7), diffuse infiltrative lymphocytosis syndrome (6), lacrimal apparatus disease (6), descending colon cancer (6), mononeuropathy (6), heart block, congenital (6), sialadenitis (6), ulcerative stomatitis (5), suppurative cholangitis (5), hypersensitivity reaction disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 146.91 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 237.27 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.2027-0.119 Picture PostScript Text
3' UTR -247.30938-0.264 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026087 - Corneodesmosin

ModBase Predicted Comparative 3D Structure on Q15517
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0042803 protein homodimerization activity

Biological Process:
GO:0003336 corneocyte desquamation
GO:0007155 cell adhesion
GO:0008544 epidermis development
GO:0030216 keratinocyte differentiation
GO:0043589 skin morphogenesis
GO:0070268 cornification
GO:0098609 cell-cell adhesion
GO:1905716 negative regulation of cornification

Cellular Component:
GO:0001533 cornified envelope
GO:0005576 extracellular region
GO:0005886 plasma membrane
GO:0005911 cell-cell junction
GO:0030057 desmosome


-  Descriptions from all associated GenBank mRNAs
  L20815 - Human S protein mRNA, complete cds.
BC031993 - Homo sapiens corneodesmosin, mRNA (cDNA clone MGC:21340 IMAGE:4747362), complete cds.
AK292636 - Homo sapiens cDNA FLJ78714 complete cds, highly similar to Homo sapiens corneodesmosin, mRNA.
JD083820 - Sequence 64844 from Patent EP1572962.
JD389175 - Sequence 370199 from Patent EP1572962.
JD365652 - Sequence 346676 from Patent EP1572962.
JD562705 - Sequence 543729 from Patent EP1572962.
JD151400 - Sequence 132424 from Patent EP1572962.
JD351201 - Sequence 332225 from Patent EP1572962.
AF030130 - Homo sapiens corneodesmosin mRNA, complete cds.
JD062662 - Sequence 43686 from Patent EP1572962.
JD428578 - Sequence 409602 from Patent EP1572962.
JD041898 - Sequence 22922 from Patent EP1572962.
JD511380 - Sequence 492404 from Patent EP1572962.
DQ891583 - Synthetic construct clone IMAGE:100004213; FLH178352.01X; RZPDo839C03128D corneodesmosin (CDSN) gene, encodes complete protein.
KJ904434 - Synthetic construct Homo sapiens clone ccsbBroadEn_13828 CDSN gene, encodes complete protein.
DQ894777 - Synthetic construct Homo sapiens clone IMAGE:100009237; FLH178348.01L; RZPDo839C03127D corneodesmosin (CDSN) gene, encodes complete protein.
CU689256 - Synthetic construct Homo sapiens gateway clone IMAGE:100019780 5' read CDSN mRNA.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q15517 (Reactome details) participates in the following event(s):

R-HSA-6814734 CDSN binds the cornified envelope
R-HSA-6814298 Late envelope proteins bind cornified envelope:CDSN
R-HSA-6814387 CASP14 cleaves filaggrin
R-HSA-6809371 Formation of the cornified envelope
R-HSA-6805567 Keratinization
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: B0S7V2, B0UYZ7, CDSN_HUMAN, ENST00000376288.1, ENST00000376288.2, G8JLG2, NM_001264, O43509, Q15517, Q5SQ85, Q5STD2, Q7LA70, Q7LA71, Q86Z04, Q8IZU4, Q8IZU5, Q8IZU6, Q8N5P3, Q95IF9, Q9NP52, Q9NPE0, Q9NPG5, Q9NRH4, Q9NRH5, Q9NRH6, Q9NRH7, Q9NRH8, Q9UBH8, Q9UIN6, Q9UIN7, Q9UIN8, Q9UIN9, Q9UIP0, uc318mvo.1, uc318mvo.2
UCSC ID: ENST00000376288.3_7
RefSeq Accession: NM_001264.5
Protein: Q15517 (aka CDSN_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.