Human Gene CEACAM1 (ENST00000161559.11_13) from GENCODE V47lift37
  Description: CEA cell adhesion molecule 1, transcript variant 1 (from RefSeq NM_001712.5)
Gencode Transcript: ENST00000161559.11_13
Gencode Gene: ENSG00000079385.23_19
Transcript (Including UTRs)
   Position: hg19 chr19:43,011,458-43,032,633 Size: 21,176 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr19:43,013,261-43,032,526 Size: 19,266 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:43,011,458-43,032,633)mRNA (may differ from genome)Protein (526 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CEAM1_HUMAN
DESCRIPTION: RecName: Full=Carcinoembryonic antigen-related cell adhesion molecule 1; AltName: Full=Biliary glycoprotein 1; Short=BGP-1; AltName: CD_antigen=CD66a; Flags: Precursor;
INTERACTION: Q16568:CARTPT; NbExp=3; IntAct=EBI-4314481, EBI-4314526; P40199:CEACAM6; NbExp=2; IntAct=EBI-4314481, EBI-4314501;
SUBCELLULAR LOCATION: Isoform 1: Cell membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Isoform 2: Secreted.
SUBCELLULAR LOCATION: Isoform 3: Secreted.
SUBCELLULAR LOCATION: Isoform 4: Secreted.
SUBCELLULAR LOCATION: Isoform 5: Cell membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Isoform 6: Cell membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Isoform 7: Cell membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Isoform 8: Cell membrane; Single-pass type I membrane protein. Note=Localizes to sites of cell-cell contact.
SIMILARITY: Belongs to the immunoglobulin superfamily. CEA family.
SIMILARITY: Contains 3 Ig-like C2-type (immunoglobulin-like) domains.
SIMILARITY: Contains 1 Ig-like V-type (immunoglobulin-like) domain.
SEQUENCE CAUTION: Sequence=AAA57141.1; Type=Erroneous gene model prediction;
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/ceacam1/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CEACAM1
Diseases sorted by gene-association score: colorectal cancer (3), microinvasive gastric cancer (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 58.10 RPKM in Colon - Transverse
Total median expression: 258.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -29.10107-0.272 Picture PostScript Text
3' UTR -529.001803-0.293 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR003599 - Ig_sub
IPR003598 - Ig_sub2
IPR013106 - Ig_V-set
IPR013151 - Immunoglobulin

Pfam Domains:
PF00047 - Immunoglobulin domain
PF07679 - Immunoglobulin I-set domain
PF07686 - Immunoglobulin V-set domain
PF13895 - Immunoglobulin domain
PF13927 - Immunoglobulin domain

SCOP Domains:
48726 - Immunoglobulin
69179 - Integrin domains

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2GK2 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P13688
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function
GO:0003779 actin binding
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0015125 bile acid transmembrane transporter activity
GO:0019900 kinase binding
GO:0019903 protein phosphatase binding
GO:0031005 filamin binding
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0046983 protein dimerization activity
GO:1990782 protein tyrosine kinase binding

Biological Process:
GO:0001525 angiogenesis
GO:0001558 regulation of cell growth
GO:0001568 blood vessel development
GO:0001915 negative regulation of T cell mediated cytotoxicity
GO:0002859 negative regulation of natural killer cell mediated cytotoxicity directed against tumor cell target
GO:0006469 negative regulation of protein kinase activity
GO:0007155 cell adhesion
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007229 integrin-mediated signaling pathway
GO:0010594 regulation of endothelial cell migration
GO:0014066 regulation of phosphatidylinositol 3-kinase signaling
GO:0015721 bile acid and bile salt transport
GO:0016477 cell migration
GO:0030334 regulation of cell migration
GO:0030853 negative regulation of granulocyte differentiation
GO:0032692 negative regulation of interleukin-1 production
GO:0032869 cellular response to insulin stimulus
GO:0035726 common myeloid progenitor cell proliferation
GO:0038016 insulin receptor internalization
GO:0038158 granulocyte colony-stimulating factor signaling pathway
GO:0042058 regulation of epidermal growth factor receptor signaling pathway
GO:0043116 negative regulation of vascular permeability
GO:0043312 neutrophil degranulation
GO:0043318 negative regulation of cytotoxic T cell degranulation
GO:0044319 wound healing, spreading of cells
GO:0045601 regulation of endothelial cell differentiation
GO:0045717 negative regulation of fatty acid biosynthetic process
GO:0050860 negative regulation of T cell receptor signaling pathway
GO:0050900 leukocyte migration
GO:0051055 negative regulation of lipid biosynthetic process
GO:0060312 regulation of blood vessel remodeling
GO:0070372 regulation of ERK1 and ERK2 cascade
GO:0090331 negative regulation of platelet aggregation
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules
GO:1901143 insulin catabolic process
GO:1903385 regulation of homophilic cell adhesion
GO:1903670 regulation of sprouting angiogenesis
GO:2000346 negative regulation of hepatocyte proliferation
GO:2001214 positive regulation of vasculogenesis

Cellular Component:
GO:0005576 extracellular region
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0005911 cell-cell junction
GO:0005912 adherens junction
GO:0009925 basal plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016324 apical plasma membrane
GO:0016328 lateral plasma membrane
GO:0030054 cell junction
GO:0030658 transport vesicle membrane
GO:0031410 cytoplasmic vesicle
GO:0031528 microvillus membrane
GO:0035579 specific granule membrane
GO:0042995 cell projection
GO:0070062 extracellular exosome
GO:0070821 tertiary granule membrane
GO:0042101 T cell receptor complex


-  Descriptions from all associated GenBank mRNAs
  X14831 - Human mRNA for transmembrane carcinoembryonic antigen BGPb (formerly TM2-CEA).
X16354 - Human mRNA for transmembrane carcinoembryonic antigen BGPa (formerly TM1-CEA).
AL833584 - Homo sapiens mRNA; cDNA DKFZp686P1556 (from clone DKFZp686P1556).
JD297691 - Sequence 278715 from Patent EP1572962.
JD110327 - Sequence 91351 from Patent EP1572962.
JD240115 - Sequence 221139 from Patent EP1572962.
JD500768 - Sequence 481792 from Patent EP1572962.
JD342681 - Sequence 323705 from Patent EP1572962.
JD553530 - Sequence 534554 from Patent EP1572962.
JD449630 - Sequence 430654 from Patent EP1572962.
JD552640 - Sequence 533664 from Patent EP1572962.
JD226200 - Sequence 207224 from Patent EP1572962.
JD241869 - Sequence 222893 from Patent EP1572962.
JD496019 - Sequence 477043 from Patent EP1572962.
JD145483 - Sequence 126507 from Patent EP1572962.
JD323274 - Sequence 304298 from Patent EP1572962.
JD324594 - Sequence 305618 from Patent EP1572962.
JD236668 - Sequence 217692 from Patent EP1572962.
JD302586 - Sequence 283610 from Patent EP1572962.
JD303912 - Sequence 284936 from Patent EP1572962.
JD147114 - Sequence 128138 from Patent EP1572962.
JD258350 - Sequence 239374 from Patent EP1572962.
J03858 - Human biliary glycoprotein I (BGP I) mRNA, complete cds.
JD103851 - Sequence 84875 from Patent EP1572962.
JD394008 - Sequence 375032 from Patent EP1572962.
JD215021 - Sequence 196045 from Patent EP1572962.
JD066020 - Sequence 47044 from Patent EP1572962.
JD107914 - Sequence 88938 from Patent EP1572962.
JD039325 - Sequence 20349 from Patent EP1572962.
AY766113 - Homo sapiens putative carcinoembryonic antigen-related cell adhesion molecule 1 short form 3 (CEACAM1) mRNA, complete cds; alternatively spliced.
X16356 - Human mRNA for transmembrane carcinoembryonic antigen BGPC (part.) (formerly TM3-CEA).
BC024164 - Homo sapiens carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein), mRNA (cDNA clone IMAGE:3932285), partial cds.
D12502 - Homo sapiens BGP mRNA for biliary glycoprotein, complete cds.
BC014473 - Homo sapiens carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein), mRNA (cDNA clone MGC:23120 IMAGE:4871488), complete cds.
M76742 - Homo sapiens alternatively spliced biliary glycoprotein (BGPa) mRNA, complete cds.
AK314211 - Homo sapiens cDNA, FLJ94942.
S71326 - BGPc=biliary glycoprotein adhesion molecule {alternatively spliced} [human, HT29 colon carcinoma cell line, mRNA Partial, 1473 nt].
M76743 - Homo sapiens alternatively spliced biliary glycoprotein (BGPa) mRNA, partial cds.
M76744 - Homo sapiens alternatively spliced biliary glycoprotein (BGP) mRNA, 3' end of cds.
HQ447271 - Synthetic construct Homo sapiens clone IMAGE:100070581; CCSB007678_02 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) (CEACAM1) gene, encodes complete protein.
KJ901302 - Synthetic construct Homo sapiens clone ccsbBroadEn_10696 CEACAM1 gene, encodes complete protein.
E03350 - cDNA sequence coding for human carcinoembryonic antigen W211.
E03352 - cDNA sequence coding for human carcinoembryonic antigen (W239).
D90311 - Homo sapiens BGPg mRNA for biliary glycoprotein, complete cds, clone: W211.
D90313 - Homo sapiens BGPi mRNA for biliary glycoprotein, complete cds, clone: W239.
M72238 - Human biliary glycoprotein mRNA, complete cds.
E03351 - cDNA sequence coding for human carcinoembryonic antigen (W233).
D90312 - Homo sapiens BGPh mRNA for biliary glycoprotein, complete cds, clone: W233.
M69176 - Human biliary glycoprotein mRNA, complete cds.
S74647 - carcinoembryonic antigen TMzCEA {5' region} [human, hepatoma Li-7A cells, mRNA Partial, 199 nt].
CU677011 - Synthetic construct Homo sapiens gateway clone IMAGE:100019544 5' read CEACAM1 mRNA.
JD488645 - Sequence 469669 from Patent EP1572962.
JD148848 - Sequence 129872 from Patent EP1572962.
JD253849 - Sequence 234873 from Patent EP1572962.
JD459304 - Sequence 440328 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P13688 (Reactome details) participates in the following event(s):

R-HSA-202717 Heterodimerization of CEACAMs
R-HSA-6799350 Exocytosis of specific granule membrane proteins
R-HSA-6798747 Exocytosis of tertiary granule membrane proteins
R-HSA-8867135 CEACAM1,3,5,6 bind opa proteins
R-HSA-202733 Cell surface interactions at the vascular wall
R-HSA-6798695 Neutrophil degranulation
R-HSA-109582 Hemostasis
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A6NE38, A8MY49, BGP , BGP1, CEACAM1 , CEAM1_HUMAN, ENST00000161559.1, ENST00000161559.10, ENST00000161559.2, ENST00000161559.3, ENST00000161559.4, ENST00000161559.5, ENST00000161559.6, ENST00000161559.7, ENST00000161559.8, ENST00000161559.9, NM_001712, O60430, P13688, Q069I7, Q13854, Q13857, Q13858, Q13859, Q13860, Q15600, Q15601, Q16170, Q5UB49, Q7KYP5, Q96CA7, Q9UQV9, uc317cco.1, uc317cco.2
UCSC ID: ENST00000161559.11_13
RefSeq Accession: NM_001712.5
Protein: P13688 (aka CEAM1_HUMAN or CEA1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.