Human Gene CENPV (ENST00000299736.5_7) from GENCODE V47lift37
  Description: centromere protein V (from RefSeq NM_181716.3)
Gencode Transcript: ENST00000299736.5_7
Gencode Gene: ENSG00000166582.11_10
Transcript (Including UTRs)
   Position: hg19 chr17:16,245,851-16,256,783 Size: 10,933 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr17:16,246,131-16,256,750 Size: 10,620 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:16,245,851-16,256,783)mRNA (may differ from genome)Protein (272 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CENPV_HUMAN
DESCRIPTION: RecName: Full=Centromere protein V; Short=CENP-V; AltName: Full=Nuclear protein p30; AltName: Full=Proline-rich protein 6;
FUNCTION: Required for distribution of pericentromeric heterochromatin in interphase nuclei and for centromere formation and organization, chromosome alignment and cytokinesis.
SUBCELLULAR LOCATION: Chromosome, centromere, kinetochore. Nucleus. Cytoplasm, cytoskeleton, spindle. Note=Enriched at the nuclear periphery and around the nucleolus. In mitotic cells, localizes to kinetochores from prometaphase to metaphase. At anaphase onset, transfers to the spindle midzone and then to the mid-body in telophase and cytokinesis.
SIMILARITY: Belongs to the gfa family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CENPV
Diseases sorted by gene-association score: intracranial primitive neuroectodermal tumor (3), diffuse glomerulonephritis (2), bone ewing's sarcoma (1), extraosseous ewing's sarcoma (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.82 RPKM in Testis
Total median expression: 352.23 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -14.2033-0.430 Picture PostScript Text
3' UTR -67.60280-0.241 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006913 - GFA/CENP-V
IPR011057 - Mss4-like

Pfam Domains:
PF04828 - Glutathione-dependent formaldehyde-activating enzyme

SCOP Domains:
101447 - Formin homology 2 domain (FH2 domain)
51316 - Mss4-like
57829 - Zn-binding ribosomal proteins

ModBase Predicted Comparative 3D Structure on Q7Z7K6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function
GO:0016846 carbon-sulfur lyase activity

Biological Process:
GO:0001667 ameboidal-type cell migration
GO:0007049 cell cycle
GO:0008152 metabolic process
GO:0031508 pericentric heterochromatin assembly
GO:0032467 positive regulation of cytokinesis
GO:0033044 regulation of chromosome organization
GO:0034508 centromere complex assembly
GO:0051301 cell division

Cellular Component:
GO:0000775 chromosome, centromeric region
GO:0000776 kinetochore
GO:0000777 condensed chromosome kinetochore
GO:0005634 nucleus
GO:0005694 chromosome
GO:0005737 cytoplasm
GO:0005819 spindle
GO:0005856 cytoskeleton
GO:0015630 microtubule cytoskeleton
GO:0051233 spindle midzone


-  Descriptions from all associated GenBank mRNAs
  BC052604 - Homo sapiens centromere protein V, mRNA (cDNA clone MGC:59900 IMAGE:5934088), complete cds.
AF514992 - Homo sapiens nuclear protein p30 mRNA, partial cds.
BC137486 - Homo sapiens centromere protein V, mRNA (cDNA clone MGC:169109 IMAGE:9021486), complete cds.
BC137487 - Homo sapiens centromere protein V, mRNA (cDNA clone MGC:169110 IMAGE:9021487), complete cds.
AY382899 - Homo sapiens nuclear protein p30 isoform 1 mRNA, complete cds; alternatively spliced.
JD258173 - Sequence 239197 from Patent EP1572962.
JD385498 - Sequence 366522 from Patent EP1572962.
JD260756 - Sequence 241780 from Patent EP1572962.
JD314386 - Sequence 295410 from Patent EP1572962.
JD142615 - Sequence 123639 from Patent EP1572962.
JD254556 - Sequence 235580 from Patent EP1572962.
JD347090 - Sequence 328114 from Patent EP1572962.
JD458282 - Sequence 439306 from Patent EP1572962.
JD416353 - Sequence 397377 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RPK2, CENPV_HUMAN, ENST00000299736.1, ENST00000299736.2, ENST00000299736.3, ENST00000299736.4, NM_181716, PRR6, Q3L8N5, Q7Z7K6, Q8NFH6, uc317mls.1, uc317mls.2
UCSC ID: ENST00000299736.5_7
RefSeq Accession: NM_181716.3
Protein: Q7Z7K6 (aka CENPV_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.