Human Gene CFB (ENST00000425368.7_5) from GENCODE V47lift37
  Description: complement factor B (from RefSeq NM_001710.6)
Gencode Transcript: ENST00000425368.7_5
Gencode Gene: ENSG00000243649.10_11
Transcript (Including UTRs)
   Position: hg19 chr6:31,913,872-31,919,861 Size: 5,990 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr6:31,913,999-31,919,807 Size: 5,809 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:31,913,872-31,919,861)mRNA (may differ from genome)Protein (764 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CFAB_HUMAN
DESCRIPTION: RecName: Full=Complement factor B; EC=3.4.21.47; AltName: Full=C3/C5 convertase; AltName: Full=Glycine-rich beta glycoprotein; Short=GBG; AltName: Full=PBF2; AltName: Full=Properdin factor B; Contains: RecName: Full=Complement factor B Ba fragment; Contains: RecName: Full=Complement factor B Bb fragment; Flags: Precursor;
FUNCTION: Factor B which is part of the alternate pathway of the complement system is cleaved by factor D into 2 fragments: Ba and Bb. Bb, a serine protease, then combines with complement factor 3b to generate the C3 or C5 convertase. It has also been implicated in proliferation and differentiation of preactivated B- lymphocytes, rapid spreading of peripheral blood monocytes, stimulation of lymphocyte blastogenesis and lysis of erythrocytes. Ba inhibits the proliferation of preactivated B-lymphocytes.
CATALYTIC ACTIVITY: Cleavage of Arg-|-Ser bond in complement component C3 alpha-chain to yield C3a and C3b, and Arg-|-Xaa bond in complement component C5 alpha-chain to yield C5a and C5b.
SUBUNIT: Monomer.
SUBCELLULAR LOCATION: Secreted.
POLYMORPHISM: Two major variants, F and S, and 2 minor variants, as well as at least 14 very rare variants, have been identified. The variants His-9 and Gln-32 are associated with a reduced risk of age-related macular degeneration (ARMD) [MIM:603075]. ARMD is a multifactorial eye disease and the most common cause of irreversible vision loss in the developed world.
DISEASE: Defects in CFB are a cause of susceptibility to hemolytic uremic syndrome atypical type 4 (AHUS4) [MIM:612924]. An atypical form of hemolytic uremic syndrome. It is a complex genetic disease characterized by microangiopathic hemolytic anemia, thrombocytopenia, renal failure and absence of episodes of enterocolitis and diarrhea. In contrast to typical hemolytic uremic syndrome, atypical forms have a poorer prognosis, with higher death rates and frequent progression to end-stage renal disease. Note=Susceptibility to the development of atypical hemolytic uremic syndrome can be conferred by mutations in various components of or regulatory factors in the complement cascade system. Other genes may play a role in modifying the phenotype.
SIMILARITY: Belongs to the peptidase S1 family.
SIMILARITY: Contains 1 peptidase S1 domain.
SIMILARITY: Contains 3 Sushi (CCP/SCR) domains.
SIMILARITY: Contains 1 VWFA domain.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/CFB";
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/bf/";

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CFB
Diseases sorted by gene-association score: hemolytic uremic syndrome, atypical 4* (1256), complement factor b deficiency* (969), macular degeneration, age-related, 14, reduced risk of* (389), cfb-related atypical hemolytic-uremic syndrome* (100), macular degeneration, age-related, 1* (44), hemolytic-uremic syndrome (21), multifocal choroiditis (18), retinal drusen (13), choroiditis (12), necrotizing ulcerative gingivitis (11), eye disease (11), c4b deficiency (10), caplan's syndrome (9), degeneration of macula and posterior pole (8), c3 glomerulopathy (7), dense deposit disease (7), kuhnt-junius degeneration (5), retinal disease (2), diabetes mellitus, insulin-dependent (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 49.15 RPKM in Liver
Total median expression: 121.28 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -39.00127-0.307 Picture PostScript Text
3' UTR -8.3054-0.154 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011360 - Compl_C2_B
IPR016060 - Complement_control_module
IPR009003 - Pept_cys/ser_Trypsin-like
IPR018114 - Peptidase_S1/S6_AS
IPR001254 - Peptidase_S1_S6
IPR001314 - Peptidase_S1A
IPR000436 - Sushi_SCR_CCP
IPR002035 - VWF_A

Pfam Domains:
PF00084 - Sushi repeat (SCR repeat)
PF00089 - Trypsin
PF00092 - von Willebrand factor type A domain
PF13519 - von Willebrand factor type A domain

SCOP Domains:
50494 - Trypsin-like serine proteases
53300 - vWA-like
57535 - Complement control module/SCR domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1DLE - X-ray 1Q0P - X-ray MuPIT 1RRK - X-ray MuPIT 1RS0 - X-ray MuPIT 1RTK - X-ray MuPIT 2OK5 - X-ray MuPIT 2WIN - X-ray MuPIT 2XWB - X-ray MuPIT 2XWJ - X-ray MuPIT 3HRZ - X-ray MuPIT 3HS0 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P00751
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001848 complement binding
GO:0004252 serine-type endopeptidase activity
GO:0005515 protein binding
GO:0008233 peptidase activity
GO:0008236 serine-type peptidase activity
GO:0016787 hydrolase activity

Biological Process:
GO:0002376 immune system process
GO:0006508 proteolysis
GO:0006956 complement activation
GO:0006957 complement activation, alternative pathway
GO:0030449 regulation of complement activation
GO:0045087 innate immune response

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005886 plasma membrane
GO:0070062 extracellular exosome
GO:0072562 blood microparticle


-  Descriptions from all associated GenBank mRNAs
  AK304045 - Homo sapiens cDNA FLJ55673 complete cds, highly similar to Complement factor B precursor (EC 3.4.21.47).
AK304042 - Homo sapiens cDNA FLJ54899 complete cds, highly similar to Complement factor B precursor (EC 3.4.21.47).
AK130533 - Homo sapiens cDNA FLJ27023 fis, clone SLV06567, highly similar to Complement factor B precursor (EC 3.4.21.47).
BC004143 - Homo sapiens complement factor B, mRNA (cDNA clone MGC:1795 IMAGE:2959705), complete cds.
BC007990 - Homo sapiens complement factor B, mRNA (cDNA clone MGC:4445 IMAGE:2959706), complete cds.
JD077056 - Sequence 58080 from Patent EP1572962.
AK223400 - Homo sapiens mRNA for complement factor B preproprotein variant, clone: FCC108A02.
S67310 - Homo sapiens complement factor B mRNA, complete cds.
JD310028 - Sequence 291052 from Patent EP1572962.
L15702 - Human complement factor B mRNA, complete cds.
JD190768 - Sequence 171792 from Patent EP1572962.
JD107113 - Sequence 88137 from Patent EP1572962.
AB590369 - Synthetic construct DNA, clone: pFN21AE1431, Homo sapiens CFB gene for complement factor B, without stop codon, in Flexi system.
DQ895516 - Synthetic construct Homo sapiens clone IMAGE:100009976; FLH185166.01L; RZPDo839G01145D complement factor B (CFB) gene, encodes complete protein.
DQ892313 - Synthetic construct clone IMAGE:100004943; FLH185170.01X; RZPDo839G01146D complement factor B (CFB) gene, encodes complete protein.
CU675885 - Synthetic construct Homo sapiens gateway clone IMAGE:100017807 5' read CFB mRNA.
KJ896493 - Synthetic construct Homo sapiens clone ccsbBroadEn_05887 CFB gene, encodes complete protein.
KR709994 - Synthetic construct Homo sapiens clone CCSBHm_00008801 CFB (CFB) mRNA, encodes complete protein.
KR709995 - Synthetic construct Homo sapiens clone CCSBHm_00008804 CFB (CFB) mRNA, encodes complete protein.
KR709996 - Synthetic construct Homo sapiens clone CCSBHm_00008805 CFB (CFB) mRNA, encodes complete protein.
AF349679 - Homo sapiens factor B (FBI12) mRNA, complete cds, alternatively spliced.
X72875 - H.sapiens mRNA for complement factor B.
X00284 - Human mRNA for complement factor B Ba fragment.
K01566 - Homo sapiens MHC serum complement factor B mRNA, partial cds.
J00126 - Human MHC class III factor B gene, Bb fragment, cDNA clone fb1.
AH001502 - Homo sapiens MHC factor B precursor peptide mRNAs, partial cds.
BC007464 - Homo sapiens cDNA clone IMAGE:3934455, **** WARNING: chimeric clone ****.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_alternativePathway - Alternative Complement Pathway
h_compPathway - Complement Pathway

Reactome (by CSHL, EBI, and GO)

Protein P00751 (Reactome details) participates in the following event(s):

R-HSA-173740 Factor B binds to C3(H2O)
R-HSA-183126 Factor B binds to surface-associated C3b
R-HSA-173745 Factor D cleaves C3(H2O)-bound Factor B
R-HSA-183122 Factor D cleaves C3b-bound Factor B
R-HSA-977605 Factor H displaces Bb
R-HSA-977619 CD55 (DAF) promotes C3bBb/C4bC2a dissociation
R-HSA-977629 Displacement of C2a/Bb by CR1
R-HSA-981621 C3 convertases spontaneously dissociate
R-HSA-173754 Properdin stabilizes C3b:Bb bound to cell surfaces
R-HSA-977363 Factor H binds to C3bBb
R-HSA-174551 Formation of alternative pathway C5 convertase
R-HSA-977375 CR1 binds C3bBb/C4bC2a
R-HSA-981535 CD55 (DAF) binds C3bBb, C4bC2a
R-HSA-183130 C3(H2O):Factor Bb cleaves C3 to C3b and C3a
R-HSA-166817 Cleavage of C3 by C3 convertases
R-HSA-173680 Activation of C5
R-HSA-173736 Alternative complement activation
R-HSA-977606 Regulation of Complement cascade
R-HSA-166663 Initial triggering of complement
R-HSA-166658 Complement cascade
R-HSA-168249 Innate Immune System
R-HSA-174577 Activation of C3 and C5
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B0QZQ6, BF, BFD, CFAB_HUMAN, ENST00000425368.1, ENST00000425368.2, ENST00000425368.3, ENST00000425368.4, ENST00000425368.5, ENST00000425368.6, NM_001710, O15006, P00751, Q29944, Q53F89, Q5JP67, Q5ST50, Q96HX6, Q9BTF5, Q9BX92, uc319uow.1, uc319uow.2
UCSC ID: ENST00000425368.7_5
RefSeq Accession: NM_001710.6
Protein: P00751 (aka CFAB_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene CFB:
husa (Genetic Atypical Hemolytic-Uremic Syndrome)
mpgn (C3 Glomerulopathy)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.