Human Gene CHP1 (ENST00000334660.10_4) from GENCODE V47lift37
  Description: calcineurin like EF-hand protein 1 (from RefSeq NM_007236.5)
Gencode Transcript: ENST00000334660.10_4
Gencode Gene: ENSG00000187446.12_8
Transcript (Including UTRs)
   Position: hg19 chr15:41,523,466-41,574,085 Size: 50,620 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr15:41,523,581-41,571,587 Size: 48,007 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:41,523,466-41,574,085)mRNA (may differ from genome)Protein (195 aa)
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-  Comments and Description Text from UniProtKB
  ID: CHP1_HUMAN
DESCRIPTION: RecName: Full=Calcineurin B homologous protein 1; AltName: Full=Calcineurin B-like protein; AltName: Full=Calcium-binding protein CHP; AltName: Full=Calcium-binding protein p22; AltName: Full=EF-hand calcium-binding domain-containing protein p22;
FUNCTION: Calcium-binding protein involved in different processes such as regulation of vesicular trafficking, plasma membrane Na(+)/H(+) exchanger and gene transcription. Involved in the constitutive exocytic membrane traffic. Mediates the association between microtubules and membrane-bound organelles of the endoplasmic reticulum and Golgi apparatus and is also required for the targeting and fusion of transcytotic vesicles (TCV) with the plasma membrane. Functions as an integral cofactor in cell pH regulation by controlling plasma membrane-type Na(+)/H(+) exchange activity. Affects the pH sensitivity of SLC9A1/NHE1 by increasing its sensitivity at acidic pH. Required for the stabilization and localization of SLC9A1/NHE1 at the plasma membrane. Inhibits serum- and GTPase-stimulated Na(+)/H(+) exchange. Plays a role as an inhibitor of ribosomal RNA transcription by repressing the nucleolar UBF1 transcriptional activity. May sequester UBF1 in the nucleoplasm and limit its translocation to the nucleolus. Associates to the ribosomal gene promoter. Acts as a negative regulator of the calcineurin/NFAT signaling pathway. Inhibits NFAT nuclear translocation and transcriptional activity by suppressing the calcium-dependent calcineurin phosphatase activity. Also negatively regulates the kinase activity of the apoptosis-induced kinase STK17B. Inhibits both STK17B auto- and substrate- phosphorylations in a calcium-dependent manner.
SUBUNIT: Monomer. Interacts with STK17B; the interaction occurs in a calcium-independent manner and induces the translocation of CHP1 from the Golgi to the nucleus. Interacts with GAPDH; the interaction is direct, occurs in a N-myristoylation-dependent manner and facilitates the ability of CHP1 to bind microtubules. Interacts with KIF1B (via C-terminus end of the kinesin-motor domain); the interaction occurs in a calcium-dependent manner. Associates (via C-terminal domain) with microtubules; the association occurs with polymerized microtubules during the cell cycle in a myristoylation- and calcium-independent manner and is enhanced by GAPDH (By similarity). Interacts with PPP3CA. Interacts with SLC9A1/NHE1 (via the juxtamembrane region of the cytoplasmic C-terminus domain); the interaction occurs at the plasma membrane in a calcium-dependent manner and at a domain that is critical for growth factor stimulation of the exchanger.
SUBCELLULAR LOCATION: Nucleus (By similarity). Cytoplasm (By similarity). Cytoplasm, cytoskeleton (By similarity). Membrane (By similarity). Endoplasmic reticulum-Golgi intermediate compartment (By similarity). Endoplasmic reticulum (By similarity). Cell membrane. Note=Localizes in cytoplasmic compartments in dividing cells. Localizes in the nucleus in quiescent cells. Exported from the nucleus to the cytoplasm through a nuclear export signal (NES) and CRM1-dependent pathway. May shuttle between nucleus and cytoplasm. Localizes with the microtubule-organizing center (MTOC) and extends toward the periphery along microtubules. Associates with membranes of the early secretory pathway in a GAPDH- independent, N-myristoylation- and calcium-dependent manner. Colocalizes with the mitotic spindle microtubules. Colocalizes with GAPDH along microtubules. Colocalizes with SLC9A1/NHE1 at the reticulum endoplasmic. Colocalizes with STK17B at the plasma membrane (By similarity). Colocalizes with SLC9A1/NHE1 at the cell membrane.
TISSUE SPECIFICITY: Ubiquitously expressed. Has been found in fetal eye, lung, liver, muscle, heart, kidney, thymus and spleen.
PTM: Phosphorylated; decreased phosphorylation is associated with an increase in SLC9A1/NHE1 Na(+)/H(+) exchange activity. Phosphorylation occurs in serum-dependent manner. The phosphorylation state may regulate the binding to SLC9A1/NHE1.
PTM: Both N-myristoylation and calcium-mediated conformational changes are essential for its function in exocytic traffic (By similarity). N-myristoylation is required for its association with microtubules and interaction with GAPDH, but not for the constitutive association to membranes.
SIMILARITY: Belongs to the calcineurin regulatory subunit family. CHP subfamily.
SIMILARITY: Contains 4 EF-hand domains.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 46.09 RPKM in Stomach
Total median expression: 1141.75 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -26.60115-0.231 Picture PostScript Text
3' UTR -720.872498-0.289 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018248 - EF-hand
IPR011992 - EF-hand-like_dom
IPR018249 - EF_HAND_2
IPR002048 - EF_hand_Ca-bd

Pfam Domains:
PF00036 - EF hand
PF13202 - EF hand
PF13405 - EF-hand domain
PF13499 - EF-hand domain pair
PF13833 - EF-hand domain pair

SCOP Domains:
47473 - EF-hand

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2E30 - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q99653
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
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 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004860 protein kinase inhibitor activity
GO:0005215 transporter activity
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0008017 microtubule binding
GO:0015459 potassium channel regulator activity
GO:0019900 kinase binding
GO:0046872 metal ion binding
GO:0048306 calcium-dependent protein binding

Biological Process:
GO:0001578 microtubule bundle formation
GO:0001933 negative regulation of protein phosphorylation
GO:0006469 negative regulation of protein kinase activity
GO:0006611 protein export from nucleus
GO:0006813 potassium ion transport
GO:0007264 small GTPase mediated signal transduction
GO:0010923 negative regulation of phosphatase activity
GO:0015031 protein transport
GO:0017156 calcium ion regulated exocytosis
GO:0022406 membrane docking
GO:0030214 hyaluronan catabolic process
GO:0031122 cytoplasmic microtubule organization
GO:0031397 negative regulation of protein ubiquitination
GO:0031953 negative regulation of protein autophosphorylation
GO:0032088 negative regulation of NF-kappaB transcription factor activity
GO:0032417 positive regulation of sodium:proton antiporter activity
GO:0042308 negative regulation of protein import into nucleus
GO:0050821 protein stabilization
GO:0051222 positive regulation of protein transport
GO:0051259 protein oligomerization
GO:0051453 regulation of intracellular pH
GO:0060050 positive regulation of protein glycosylation
GO:0061024 membrane organization
GO:0061025 membrane fusion
GO:0070885 negative regulation of calcineurin-NFAT signaling cascade
GO:0071468 cellular response to acidic pH
GO:0090314 positive regulation of protein targeting to membrane
GO:1901214 regulation of neuron death

Cellular Component:
GO:0000139 Golgi membrane
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0005925 focal adhesion
GO:0012505 endomembrane system
GO:0015630 microtubule cytoskeleton
GO:0016020 membrane
GO:0030133 transport vesicle
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC001828 - Homo sapiens mRNA similar to ribosomal protein L15 (cDNA clone IMAGE:2961444).
AK299660 - Homo sapiens cDNA FLJ57188 complete cds, highly similar to Calcium-binding protein p22.
LF383718 - JP 2014500723-A/191221: Polycomb-Associated Non-Coding RNAs.
AK307060 - Homo sapiens cDNA, FLJ97008.
AK312582 - Homo sapiens cDNA, FLJ92957, Homo sapiens calcium binding protein P22 (CHP), mRNA.
U61538 - Human calcium-binding protein chp mRNA, complete cds.
BC051815 - Homo sapiens cDNA clone IMAGE:6471976, **** WARNING: chimeric clone ****.
BC031293 - Homo sapiens calcium binding protein P22, mRNA (cDNA clone MGC:8914 IMAGE:3913445), complete cds.
CR542085 - Homo sapiens full open reading frame cDNA clone RZPDo834C0237D for gene CHP, calcium binding protein P22; complete cds, without stopcodon.
CR536539 - Homo sapiens full open reading frame cDNA clone RZPDo834F0222D for gene CHP, calcium binding protein P22; complete cds, incl. stopcodon.
MA619295 - JP 2018138019-A/191221: Polycomb-Associated Non-Coding RNAs.
JD163728 - Sequence 144752 from Patent EP1572962.
JD394403 - Sequence 375427 from Patent EP1572962.
AK094363 - Homo sapiens cDNA FLJ37044 fis, clone BRACE2012062, weakly similar to CALCIUM-BINDING PROTEIN P22.
BC008373 - Homo sapiens calcium binding protein P22, mRNA (cDNA clone IMAGE:3996377).
AK000095 - Homo sapiens cDNA FLJ20088 fis, clone COL03869.
KJ902222 - Synthetic construct Homo sapiens clone ccsbBroadEn_11616 CHP gene, encodes complete protein.
JD064282 - Sequence 45306 from Patent EP1572962.
JD296903 - Sequence 277927 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q99653 (Reactome details) participates in the following event(s):

R-HSA-2160884 HA:HAR:HYAL2 binds to SLC9A1:p-CHP:Ca2+
R-HSA-2160916 Hyaluronan uptake and degradation
R-HSA-2142845 Hyaluronan metabolism
R-HSA-1630316 Glycosaminoglycan metabolism
R-HSA-71387 Metabolism of carbohydrates
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: B2R6H9, CHP, CHP1_HUMAN, ENST00000334660.1, ENST00000334660.2, ENST00000334660.3, ENST00000334660.4, ENST00000334660.5, ENST00000334660.6, ENST00000334660.7, ENST00000334660.8, ENST00000334660.9, NM_007236, Q6FHZ9, Q99653, uc317uat.1, uc317uat.2
UCSC ID: ENST00000334660.10_4
RefSeq Accession: NM_007236.5
Protein: Q99653 (aka CHP1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.