Human Gene CLASP2 (ENST00000682230.1_4) from GENCODE V47lift37
  Description: cytoplasmic linker associated protein 2, transcript variant 23 (from RefSeq NM_001400406.1)
Gencode Transcript: ENST00000682230.1_4
Gencode Gene: ENSG00000163539.19_17
Transcript (Including UTRs)
   Position: hg19 chr3:33,537,737-33,759,746 Size: 222,010 Total Exon Count: 39 Strand: -
Coding Region
   Position: hg19 chr3:33,540,123-33,759,494 Size: 219,372 Coding Exon Count: 39 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:33,537,737-33,759,746)mRNA (may differ from genome)Protein (1506 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsHGNC
MalacardsMGIPubMedUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CLASP2
Diseases sorted by gene-association score: clostridium difficile colitis (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -143.20252-0.568 Picture PostScript Text
3' UTR -524.302386-0.220 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  AL137636 - Homo sapiens mRNA; cDNA DKFZp434F075 (from clone DKFZp434F075); partial cds.
AB014527 - Homo sapiens KIAA0627 mRNA for KIAA0627 protein.
BC140778 - Homo sapiens cytoplasmic linker associated protein 2, mRNA (cDNA clone MGC:176455 IMAGE:9021646), complete cds.
BX640725 - Homo sapiens mRNA; cDNA DKFZp686D11262 (from clone DKFZp686D11262).
AK024770 - Homo sapiens cDNA: FLJ21117 fis, clone CAS05566.
BC011530 - Homo sapiens, clone IMAGE:3874558, mRNA, partial cds.
AK293963 - Homo sapiens cDNA FLJ61103 complete cds, highly similar to CLIP-associating protein 2.
AB385365 - Synthetic construct DNA, clone: pF1KA0627, Homo sapiens CLASP2 gene for CLIP-associating protein 2, complete cds, without stop codon, in Flexi system.
AK297322 - Homo sapiens cDNA FLJ60078 partial cds, highly similar to CLIP-associating protein 2.
AK091451 - Homo sapiens cDNA FLJ34132 fis, clone FCBBF3010586, weakly similar to Microtubule associated-protein orbit.
AX746992 - Sequence 517 from Patent EP1308459.
BC029035 - Homo sapiens cytoplasmic linker associated protein 2, mRNA (cDNA clone IMAGE:5197008), complete cds.
AK294345 - Homo sapiens cDNA FLJ59499 complete cds, highly similar to CLIP-associating protein 2.
AK090716 - Homo sapiens cDNA FLJ33397 fis, clone BRACE2007937, highly similar to CLIP-associating protein 2.
AX746588 - Sequence 113 from Patent EP1308459.
KJ902285 - Synthetic construct Homo sapiens clone ccsbBroadEn_11679 CLASP2 gene, encodes complete protein.
CU688584 - Synthetic construct Homo sapiens gateway clone IMAGE:100018274 5' read CLASP2 mRNA.
CR626991 - Homo sapiens mRNA; cDNA DKFZp686D2150 (from clone DKFZp686D2150).
JD362555 - Sequence 343579 from Patent EP1572962.
JD302337 - Sequence 283361 from Patent EP1572962.
JD089381 - Sequence 70405 from Patent EP1572962.
JD085031 - Sequence 66055 from Patent EP1572962.
JD284169 - Sequence 265193 from Patent EP1572962.
JD160191 - Sequence 141215 from Patent EP1572962.
JD527382 - Sequence 508406 from Patent EP1572962.
JD169067 - Sequence 150091 from Patent EP1572962.
JD337869 - Sequence 318893 from Patent EP1572962.
JD437065 - Sequence 418089 from Patent EP1572962.
JD304215 - Sequence 285239 from Patent EP1572962.
JD528902 - Sequence 509926 from Patent EP1572962.
JD114561 - Sequence 95585 from Patent EP1572962.
JD260548 - Sequence 241572 from Patent EP1572962.
JD139233 - Sequence 120257 from Patent EP1572962.
JD261593 - Sequence 242617 from Patent EP1572962.
JD061091 - Sequence 42115 from Patent EP1572962.
JD079964 - Sequence 60988 from Patent EP1572962.
JD108852 - Sequence 89876 from Patent EP1572962.
JD334853 - Sequence 315877 from Patent EP1572962.
JD057585 - Sequence 38609 from Patent EP1572962.
JD338359 - Sequence 319383 from Patent EP1572962.
JD094796 - Sequence 75820 from Patent EP1572962.
JD438957 - Sequence 419981 from Patent EP1572962.
JD214313 - Sequence 195337 from Patent EP1572962.
JD473544 - Sequence 454568 from Patent EP1572962.
JD535955 - Sequence 516979 from Patent EP1572962.
JD436964 - Sequence 417988 from Patent EP1572962.
JD348233 - Sequence 329257 from Patent EP1572962.
JD475449 - Sequence 456473 from Patent EP1572962.
JD328802 - Sequence 309826 from Patent EP1572962.
JD207270 - Sequence 188294 from Patent EP1572962.
JD237213 - Sequence 218237 from Patent EP1572962.
JD289492 - Sequence 270516 from Patent EP1572962.
JD268910 - Sequence 249934 from Patent EP1572962.
JD349280 - Sequence 330304 from Patent EP1572962.
JD038180 - Sequence 19204 from Patent EP1572962.
DQ200868 - Homo sapiens CLIP-associated protein 2 delta mRNA, partial cds.
JD507145 - Sequence 488169 from Patent EP1572962.
JD348871 - Sequence 329895 from Patent EP1572962.
JD510408 - Sequence 491432 from Patent EP1572962.
JD196608 - Sequence 177632 from Patent EP1572962.
JD565663 - Sequence 546687 from Patent EP1572962.
JD402084 - Sequence 383108 from Patent EP1572962.
JD462550 - Sequence 443574 from Patent EP1572962.
JD276391 - Sequence 257415 from Patent EP1572962.
JD389772 - Sequence 370796 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A804HJG7, A0A804HJG7_HUMAN, CLASP2 , NM_001400406, uc330jpo.1, uc330jpo.2
UCSC ID: ENST00000682230.1_4
RefSeq Accession: NM_001365631.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.