Human Gene NCAPD2 (ENST00000315579.10_4) from GENCODE V47lift37
  Description: non-SMC condensin I complex subunit D2 (from RefSeq NM_014865.4)
Gencode Transcript: ENST00000315579.10_4
Gencode Gene: ENSG00000010292.13_8
Transcript (Including UTRs)
   Position: hg19 chr12:6,603,268-6,641,121 Size: 37,854 Total Exon Count: 32 Strand: +
Coding Region
   Position: hg19 chr12:6,604,265-6,640,578 Size: 36,314 Coding Exon Count: 31 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:6,603,268-6,641,121)mRNA (may differ from genome)Protein (1401 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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-  Comments and Description Text from UniProtKB
  ID: CND1_HUMAN
DESCRIPTION: RecName: Full=Condensin complex subunit 1; AltName: Full=Chromosome condensation-related SMC-associated protein 1; AltName: Full=Chromosome-associated protein D2; Short=hCAP-D2; AltName: Full=Non-SMC condensin I complex subunit D2; AltName: Full=XCAP-D2 homolog;
FUNCTION: Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. May target the condensin complex to DNA via its C-terminal domain.
SUBUNIT: Component of the condensin complex, which contains the SMC2 and SMC4 heterodimer, and three non SMC subunits that probably regulate the complex: NCAPH/BRRN1, NCAPD2/CAPD2 and NCAPG. Interacts with histones H1 and H3.
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Chromosome. Note=In interphase cells, the majority of the condensin complex is found in the cytoplasm, while a minority of the complex is associated with chromatin. A subpopulation of the complex however remains associated with chromosome foci in interphase cells. During mitosis, most of the condensin complex is associated with the chromatin. At the onset of prophase, the regulatory subunits of the complex are phosphorylated by CDK1, leading to condensin's association with chromosome arms and to chromosome condensation. Dissociation from chromosomes is observed in late telophase.
DOMAIN: The C-terminal domain interacts with histones H1 and H3, and may be responsible for condensin complex targeting to mitotic chromosomes. This domain is independent from the bipartite nuclear localization signal, although they are contained within the same region.
PTM: Phosphorylated by CDK1. Its phosphorylation, as well as that of NCAPH and NCAPG subunits, activates the condensin complex and is required for chromosome condensation (By similarity). Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Belongs to the CND1 (condensin subunit 1) family.
SEQUENCE CAUTION: Sequence=BAA09930.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 50.13 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 371.44 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -18.5076-0.243 Picture PostScript Text
3' UTR -143.40543-0.264 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR026971 - CND1/NCAPD3
IPR007673 - Condensin_cplx_su1
IPR024324 - Condensin_cplx_su1_N

Pfam Domains:
PF12717 - non-SMC mitotic condensation complex subunit 1
PF12922 - non-SMC mitotic condensation complex subunit 1, N-term

SCOP Domains:
48371 - ARM repeat
48431 - Lipovitellin-phosvitin complex, superhelical domain
89095 - GatB/YqeY motif
53383 - PLP-dependent transferases

ModBase Predicted Comparative 3D Structure on Q15021
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003682 chromatin binding
GO:0005515 protein binding
GO:0042393 histone binding

Biological Process:
GO:0000278 mitotic cell cycle
GO:0007049 cell cycle
GO:0007076 mitotic chromosome condensation
GO:0010032 meiotic chromosome condensation
GO:0030261 chromosome condensation
GO:0051301 cell division
GO:0051304 chromosome separation

Cellular Component:
GO:0000779 condensed chromosome, centromeric region
GO:0000793 condensed chromosome
GO:0000796 condensin complex
GO:0000797 condensin core heterodimer
GO:0000799 nuclear condensin complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane
GO:0000228 nuclear chromosome


-  Descriptions from all associated GenBank mRNAs
  D63880 - Homo sapiens mRNA for KIAA0159 gene.
LP895243 - Sequence 107 from Patent EP3253886.
BC016913 - Homo sapiens non-SMC condensin I complex, subunit D2, mRNA (cDNA clone IMAGE:4419375), partial cds.
AK125155 - Homo sapiens cDNA FLJ43165 fis, clone FCBBF3002163, highly similar to Homo sapiens chromosome condensation-related SMC-associated protein 1.
AK303310 - Homo sapiens cDNA FLJ58740 complete cds, highly similar to Condensin complex subunit 1.
AK128354 - Homo sapiens cDNA FLJ46496 fis, clone THYMU3028702, highly similar to Condensin complex subunit 1.
JD458827 - Sequence 439851 from Patent EP1572962.
BC028182 - Homo sapiens non-SMC condensin I complex, subunit D2, mRNA (cDNA clone MGC:39941 IMAGE:5395775), complete cds.
AK022511 - Homo sapiens cDNA FLJ12449 fis, clone NT2RM1000314, highly similar to Condensin complex subunit 1.
JD220099 - Sequence 201123 from Patent EP1572962.
CU688420 - Synthetic construct Homo sapiens gateway clone IMAGE:100020561 5' read NCAPD2 mRNA.
AB385288 - Synthetic construct DNA, clone: pF1KA0159, Homo sapiens NCAPD2 gene for condensin complex subunit 1, complete cds, without stop codon, in Flexi system.
DQ573571 - Homo sapiens piRNA piR-41683, complete sequence.
DQ593464 - Homo sapiens piRNA piR-33576, complete sequence.
JD407761 - Sequence 388785 from Patent EP1572962.
JD428105 - Sequence 409129 from Patent EP1572962.
JD254015 - Sequence 235039 from Patent EP1572962.
JD220075 - Sequence 201099 from Patent EP1572962.
JD413386 - Sequence 394410 from Patent EP1572962.
JD246917 - Sequence 227941 from Patent EP1572962.
JD491227 - Sequence 472251 from Patent EP1572962.
JD381033 - Sequence 362057 from Patent EP1572962.
JD421838 - Sequence 402862 from Patent EP1572962.
JD142975 - Sequence 123999 from Patent EP1572962.
JD497595 - Sequence 478619 from Patent EP1572962.
JD542323 - Sequence 523347 from Patent EP1572962.
JD542324 - Sequence 523348 from Patent EP1572962.
JD230797 - Sequence 211821 from Patent EP1572962.
JD230804 - Sequence 211828 from Patent EP1572962.
JD065927 - Sequence 46951 from Patent EP1572962.
JD472388 - Sequence 453412 from Patent EP1572962.
JD142887 - Sequence 123911 from Patent EP1572962.
JD204593 - Sequence 185617 from Patent EP1572962.
JD351652 - Sequence 332676 from Patent EP1572962.
JD193545 - Sequence 174569 from Patent EP1572962.
JD154814 - Sequence 135838 from Patent EP1572962.
JD529093 - Sequence 510117 from Patent EP1572962.
JD169147 - Sequence 150171 from Patent EP1572962.
JD169148 - Sequence 150172 from Patent EP1572962.
JD041185 - Sequence 22209 from Patent EP1572962.
JD041186 - Sequence 22210 from Patent EP1572962.
JD320825 - Sequence 301849 from Patent EP1572962.
JD387070 - Sequence 368094 from Patent EP1572962.
JD382608 - Sequence 363632 from Patent EP1572962.
JD225810 - Sequence 206834 from Patent EP1572962.
JD443358 - Sequence 424382 from Patent EP1572962.
JD117911 - Sequence 98935 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_akap95Pathway - AKAP95 role in mitosis and chromosome dynamics

Reactome (by CSHL, EBI, and GO)

Protein Q15021 (Reactome details) participates in the following event(s):

R-HSA-2514854 CDK1 phosphorylates condensin I
R-HSA-2529020 CK2 phosphorylates condensin I subunits
R-HSA-2529015 Dephosphorylation of CK2-modified condensin I
R-HSA-2514853 Condensation of Prometaphase Chromosomes
R-HSA-68877 Mitotic Prometaphase
R-HSA-68886 M Phase
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: CAPD2, CNAP1, CND1_HUMAN, D3DUR4, ENST00000315579.1, ENST00000315579.2, ENST00000315579.3, ENST00000315579.4, ENST00000315579.5, ENST00000315579.6, ENST00000315579.7, ENST00000315579.8, ENST00000315579.9, KIAA0159, NCAPD2 , NM_014865, Q15021, Q8N6U3, uc317pvk.1, uc317pvk.2
UCSC ID: ENST00000315579.10_4
RefSeq Accession: NM_014865.4
Protein: Q15021 (aka CND1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.