Human Gene CNDP2 (ENST00000324262.9_4) from GENCODE V47lift37
  Description: carnosine dipeptidase 2, transcript variant 1 (from RefSeq NM_018235.3)
Gencode Transcript: ENST00000324262.9_4
Gencode Gene: ENSG00000133313.15_11
Transcript (Including UTRs)
   Position: hg19 chr18:72,163,598-72,190,689 Size: 27,092 Total Exon Count: 12 Strand: +
Coding Region
   Position: hg19 chr18:72,167,209-72,187,303 Size: 20,095 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:72,163,598-72,190,689)mRNA (may differ from genome)Protein (475 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CNDP2_HUMAN
DESCRIPTION: RecName: Full=Cytosolic non-specific dipeptidase; EC=3.4.13.18; AltName: Full=CNDP dipeptidase 2; AltName: Full=Glutamate carboxypeptidase-like protein 1; AltName: Full=Peptidase A;
FUNCTION: Hydrolyzes a variety of dipeptides including L-carnosine but has a strong preference for Cys-Gly. Isoform 2 may be play a role as tumor suppressor in hepatocellular carcinoma (HCC) cells.
CATALYTIC ACTIVITY: Hydrolysis of dipeptides, preferentially hydrophobic dipeptides including prolyl amino acids.
COFACTOR: Binds 2 manganese ions per subunit (By similarity).
ENZYME REGULATION: Inhibited by p-hydroxymercurybenzoate. The inhibitory concentration 50% (IC(50)) is 13 uM. Inhibited by bestatin. The inhibitory concentration 50% (IC(50)) is 7 nM at pH 9.5.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=1.04 mM for Ser-Gln (at pH 7.5 and in the presence of 0.1 mM manganese ions); KM=0.6 mM for Cys-Gly (at pH 8.0 and in the presence of 50 uM manganese ions); KM=15 mM for carnosine (at pH 9.5 and in the presence of 0.1 mM manganese ions);
SUBUNIT: Homodimer.
INTERACTION: Q92597:NDRG1; NbExp=1; IntAct=EBI-1190734, EBI-716486;
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Isoform 1 is ubiquitously expressed with higher levels in kidney and liver (at protein level). Isoform 2 is expressed in fetal tissues, it is only expressed in adult liver and placental tissues.
SIMILARITY: Belongs to the peptidase M20A family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CNDP2
Diseases sorted by gene-association score: pyriform sinus cancer (16), hypopharynx cancer (6), aspiration pneumonitis (6), crigler-najjar syndrome, type i (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 89.66 RPKM in Kidney - Cortex
Total median expression: 1333.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -50.10161-0.311 Picture PostScript Text
3' UTR -1146.903386-0.339 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001261 - ArgE/DapE_CS
IPR017153 - GSH_degradosome_DUG1
IPR002933 - Peptidase_M20
IPR011650 - Peptidase_M20_dimer

Pfam Domains:
PF01546 - Peptidase family M20/M25/M40
PF07687 - Peptidase dimerisation domain

SCOP Domains:
53187 - Zn-dependent exopeptidases
55031 - Bacterial exopeptidase dimerisation domain

ModBase Predicted Comparative 3D Structure on Q96KP4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004180 carboxypeptidase activity
GO:0008233 peptidase activity
GO:0008237 metallopeptidase activity
GO:0016787 hydrolase activity
GO:0016805 dipeptidase activity
GO:0046872 metal ion binding
GO:0102008 cytosolic dipeptidase activity

Biological Process:
GO:0006508 proteolysis
GO:0006750 glutathione biosynthetic process
GO:0008152 metabolic process

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AK300904 - Homo sapiens cDNA FLJ54170 complete cds, highly similar to Cytosolic nonspecific dipeptidase.
AK001692 - Homo sapiens cDNA FLJ10830 fis, clone NT2RP4001143, weakly similar to SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE (EC 3.5.1.18).
AK298309 - Homo sapiens cDNA FLJ56358 complete cds, highly similar to Cytosolic nonspecific dipeptidase.
BC001375 - Homo sapiens CNDP dipeptidase 2 (metallopeptidase M20 family), mRNA (cDNA clone MGC:928 IMAGE:3051369), complete cds.
JD217274 - Sequence 198298 from Patent EP1572962.
JD195511 - Sequence 176535 from Patent EP1572962.
JD431674 - Sequence 412698 from Patent EP1572962.
JD431675 - Sequence 412699 from Patent EP1572962.
AK097155 - Homo sapiens cDNA FLJ39836 fis, clone SPLEN2014073, highly similar to Cytosolic nonspecific dipeptidase.
AF258592 - Homo sapiens PP856 mRNA, complete cds.
BC003176 - Homo sapiens CNDP dipeptidase 2 (metallopeptidase M20 family), mRNA (cDNA clone MGC:4413 IMAGE:2957870), complete cds.
EU794600 - Homo sapiens epididymis secretory protein Li 13 (HEL-S-13) mRNA, complete cds.
JD559332 - Sequence 540356 from Patent EP1572962.
AJ347717 - Homo sapiens mRNA for glutamate carboxypeptidase (CPGL gene).
CU678422 - Synthetic construct Homo sapiens gateway clone IMAGE:100020327 5' read CNDP2 mRNA.
KJ894253 - Synthetic construct Homo sapiens clone ccsbBroadEn_03647 CNDP2 gene, encodes complete protein.
AK092863 - Homo sapiens cDNA FLJ35544 fis, clone SPLEN2003678.
AX747775 - Sequence 1300 from Patent EP1308459.
AK024471 - Homo sapiens mRNA for FLJ00064 protein, partial cds.
AK001262 - Homo sapiens cDNA FLJ10400 fis, clone NT2RM4000395.
AK001983 - Homo sapiens cDNA FLJ11121 fis, clone PLACE1006139.
JD283887 - Sequence 264911 from Patent EP1572962.
JD086546 - Sequence 67570 from Patent EP1572962.
JD270989 - Sequence 252013 from Patent EP1572962.
JD099402 - Sequence 80426 from Patent EP1572962.
JD490229 - Sequence 471253 from Patent EP1572962.
JD235610 - Sequence 216634 from Patent EP1572962.
JD348329 - Sequence 329353 from Patent EP1572962.
JD173026 - Sequence 154050 from Patent EP1572962.
JD212342 - Sequence 193366 from Patent EP1572962.
JD197741 - Sequence 178765 from Patent EP1572962.
JD412677 - Sequence 393701 from Patent EP1572962.
JD512624 - Sequence 493648 from Patent EP1572962.
JD176874 - Sequence 157898 from Patent EP1572962.
JD370199 - Sequence 351223 from Patent EP1572962.
JD167609 - Sequence 148633 from Patent EP1572962.
JD167608 - Sequence 148632 from Patent EP1572962.
JD300941 - Sequence 281965 from Patent EP1572962.
JD481184 - Sequence 462208 from Patent EP1572962.
JD471775 - Sequence 452799 from Patent EP1572962.
JD179276 - Sequence 160300 from Patent EP1572962.
JD188714 - Sequence 169738 from Patent EP1572962.
JD380490 - Sequence 361514 from Patent EP1572962.
JD380491 - Sequence 361515 from Patent EP1572962.
JD431191 - Sequence 412215 from Patent EP1572962.
JD373377 - Sequence 354401 from Patent EP1572962.
JD042466 - Sequence 23490 from Patent EP1572962.
JD112513 - Sequence 93537 from Patent EP1572962.
JD089597 - Sequence 70621 from Patent EP1572962.
JD279273 - Sequence 260297 from Patent EP1572962.
JD223492 - Sequence 204516 from Patent EP1572962.
JD537391 - Sequence 518415 from Patent EP1572962.
JD194838 - Sequence 175862 from Patent EP1572962.
JD243155 - Sequence 224179 from Patent EP1572962.
JD238286 - Sequence 219310 from Patent EP1572962.
JD456925 - Sequence 437949 from Patent EP1572962.
JD380592 - Sequence 361616 from Patent EP1572962.
JD548849 - Sequence 529873 from Patent EP1572962.
JD171863 - Sequence 152887 from Patent EP1572962.
JD089037 - Sequence 70061 from Patent EP1572962.
JD534386 - Sequence 515410 from Patent EP1572962.
JD364412 - Sequence 345436 from Patent EP1572962.
JD101404 - Sequence 82428 from Patent EP1572962.
JD482858 - Sequence 463882 from Patent EP1572962.
JD136329 - Sequence 117353 from Patent EP1572962.
JD348169 - Sequence 329193 from Patent EP1572962.
JD469948 - Sequence 450972 from Patent EP1572962.
JD420548 - Sequence 401572 from Patent EP1572962.
JD201389 - Sequence 182413 from Patent EP1572962.
JD430841 - Sequence 411865 from Patent EP1572962.
JD558469 - Sequence 539493 from Patent EP1572962.
JD479830 - Sequence 460854 from Patent EP1572962.
JD442732 - Sequence 423756 from Patent EP1572962.
JD377363 - Sequence 358387 from Patent EP1572962.
JD087736 - Sequence 68760 from Patent EP1572962.
JD366477 - Sequence 347501 from Patent EP1572962.
JD105930 - Sequence 86954 from Patent EP1572962.
JD557836 - Sequence 538860 from Patent EP1572962.
JD103741 - Sequence 84765 from Patent EP1572962.
JD064210 - Sequence 45234 from Patent EP1572962.
JD311148 - Sequence 292172 from Patent EP1572962.
JD136553 - Sequence 117577 from Patent EP1572962.
JD325109 - Sequence 306133 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-4041 - γ-glutamyl cycle

Reactome (by CSHL, EBI, and GO)

Protein Q96KP4 (Reactome details) participates in the following event(s):

R-HSA-1247910 CNDP2:2Mn2+ dimer hydrolyses CysGly
R-HSA-174403 Glutathione synthesis and recycling
R-HSA-156590 Glutathione conjugation
R-HSA-156580 Phase II - Conjugation of compounds
R-HSA-211859 Biological oxidations
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: B3KUG4, CN2, CNDP2 , CNDP2_HUMAN, CPGL, ENST00000324262.1, ENST00000324262.2, ENST00000324262.3, ENST00000324262.4, ENST00000324262.5, ENST00000324262.6, ENST00000324262.7, ENST00000324262.8, HEL-S-13, NM_018235, PEPA, Q8WY59, Q96KP4, Q9BQ94, Q9NVB4, uc317rpv.1, uc317rpv.2, V9HWE5
UCSC ID: ENST00000324262.9_4
RefSeq Accession: NM_018235.3
Protein: Q96KP4 (aka CNDP2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.