Human Gene COA5 (ENST00000328709.8_7) from GENCODE V47lift37
  Description: cytochrome c oxidase assembly factor 5 (from RefSeq NM_001008215.3)
Gencode Transcript: ENST00000328709.8_7
Gencode Gene: ENSG00000183513.9_9
Transcript (Including UTRs)
   Position: hg19 chr2:99,215,777-99,224,975 Size: 9,199 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr2:99,217,215-99,224,868 Size: 7,654 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:99,215,777-99,224,975)mRNA (may differ from genome)Protein (74 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: COA5_HUMAN
DESCRIPTION: RecName: Full=Cytochrome c oxidase assembly factor 5;
FUNCTION: Involved in an early step of the mitochondrial complex IV assembly process.
DISEASE: Defects in COA5 are the cause of mitochondrial complex IV deficiency (MT-C4D) [MIM:220110]. A disorder of the mitochondrial respiratory chain with heterogeneous clinical manifestations, ranging from isolated myopathy to severe multisystem disease affecting several tissues and organs. Features include hypertrophic cardiomyopathy, hepatomegaly and liver dysfunction, hypotonia, muscle weakness, exercise intolerance, developmental delay, delayed motor development and mental retardation. Some affected individuals manifest a fatal hypertrophic cardiomyopathy resulting in neonatal death. A subset of patients manifest Leigh syndrome.
SIMILARITY: Belongs to the PET191 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: COA5
Diseases sorted by gene-association score: cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 3* (1381), fatal infantile cytochrome c oxidase deficiency* (157), mitochondrial complex iv deficiency* (50), cardioencephalomyopathy (16), mitochondrial cardiomyopathy (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 25.05 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 776.54 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -42.90107-0.401 Picture PostScript Text
3' UTR -364.501438-0.253 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018793 - Cyt_c_oxidase_assmbl_Pet191

Pfam Domains:
PF10203 - Cytochrome c oxidase assembly protein PET191

ModBase Predicted Comparative 3D Structure on Q86WW8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0033617 mitochondrial respiratory chain complex IV assembly

Cellular Component:
GO:0005739 mitochondrion


-  Descriptions from all associated GenBank mRNAs
  BC047722 - Homo sapiens chromosome 2 open reading frame 64, mRNA (cDNA clone MGC:52110 IMAGE:5748383), complete cds.
AK131034 - Homo sapiens cDNA FLJ27524 fis, clone TST09610.
HQ257887 - Synthetic construct Homo sapiens clone IMAGE:100072196 chromosome 2 open reading frame 64 (C2orf64) gene, encodes complete protein.
KJ896299 - Synthetic construct Homo sapiens clone ccsbBroadEn_05693 COA5 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: C2orf64, COA5_HUMAN, ENST00000328709.1, ENST00000328709.2, ENST00000328709.3, ENST00000328709.4, ENST00000328709.5, ENST00000328709.6, ENST00000328709.7, NM_001008215, Q86WW8, uc317sod.1, uc317sod.2
UCSC ID: ENST00000328709.8_7
RefSeq Accession: NM_001008215.3
Protein: Q86WW8 (aka COA5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.