Human Gene COMT (ENST00000361682.11_8) from GENCODE V47lift37
  Description: catechol-O-methyltransferase, transcript variant 5 (from RefSeq NM_001362828.2)
Gencode Transcript: ENST00000361682.11_8
Gencode Gene: ENSG00000093010.15_13
Transcript (Including UTRs)
   Position: hg19 chr22:19,929,295-19,957,498 Size: 28,204 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr22:19,950,050-19,956,259 Size: 6,210 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:19,929,295-19,957,498)mRNA (may differ from genome)Protein (271 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: COMT_HUMAN
DESCRIPTION: RecName: Full=Catechol O-methyltransferase; EC=2.1.1.6;
FUNCTION: Catalyzes the O-methylation, and thereby the inactivation, of catecholamine neurotransmitters and catechol hormones. Also shortens the biological half-lives of certain neuroactive drugs, like L-DOPA, alpha-methyl DOPA and isoproterenol.
CATALYTIC ACTIVITY: S-adenosyl-L-methionine + a catechol = S- adenosyl-L-homocysteine + a guaiacol.
COFACTOR: Binds 1 magnesium ion per subunit.
INTERACTION: Q9H0D6:XRN2; NbExp=1; IntAct=EBI-372265, EBI-372110;
SUBCELLULAR LOCATION: Isoform Soluble: Cytoplasm.
SUBCELLULAR LOCATION: Isoform Membrane-bound: Cell membrane; Single-pass type II membrane protein; Extracellular side.
TISSUE SPECIFICITY: Brain, liver, placenta, lymphocytes and erythrocytes.
PTM: The N-terminus is blocked.
MASS SPECTROMETRY: Mass=24352; Mass_error=2; Method=Electrospray; Range=52-271; Source=PubMed:8020475;
POLYMORPHISM: Two alleles, COMT*1 or COMT*H with Val-158 and COMT*2 or COMT*L with Met-158 are responsible for a three to four- fold difference in enzymatic activity.
POLYMORPHISM: Low enzyme activity alleles are associated with genetic susceptibility to alcoholism [MIM:103780].
SIMILARITY: Belongs to the mammalian catechol-O-methyltransferase family.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/comt/";
WEB RESOURCE: Name=Wikipedia; Note=Catechol-O-methyl transferase entry; URL="http://en.wikipedia.org/wiki/Catechol-O-methyl_transferase";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: COMT
Diseases sorted by gene-association score: panic disorder* (581), schizophrenia* (423), comt-related altered drug metabolism* (100), comt-related pain sensitivity alteration* (100), schizotypal personality disorder (35), velocardiofacial syndrome* (34), paranoid schizophrenia (30), psychotic disorder (23), conversion disorder (21), toxicity or absent response to clozapine* (18), neonatal abstinence syndrome (17), obsessive-compulsive disorder (15), conduct disorder (15), hearing loss, cisplatin-induced* (14), attention deficit-hyperactivity disorder (13), parkinson disease 5 (12), mood disorder (12), anxiety disorder (12), brunner syndrome (11), alexithymia (11), borderline personality disorder (11), bipolar i disorder (11), hyperprolinemia (10), childhood-onset schizophrenia (10), somatoform disorder (10), bulimia nervosa (9), breast disease (9), postpartum depression (9), substance abuse (9), oppositional defiant disorder (8), gilles de la tourette syndrome (8), drug addiction (8), eating disorder (8), cannabis dependence (8), ross river fever (8), personality disorder (7), chronic pain (7), phobia, specific (7), antisocial personality disorder (7), post-traumatic stress disorder (7), schizophreniform disorder (7), degenerative disc disease (7), anorexia nervosa (7), tardive dyskinesia (6), parkinson disease, late-onset (6), nicotine dependence, protection against (6), narcolepsy (6), oculogyric crisis (6), mycetoma (6), dysbaric osteonecrosis (6), chronic fatigue syndrome (6), traumatic brain injury (6), disease of mental health (5), uterine fibroid (5), early-onset schizophrenia (5), dystonia-1, torsion (5), phobic disorder (5), bipolar disorder (5), brain injury (4), mental depression (4), kleine-levin hibernation syndrome (4), alcohol dependence (3), autism spectrum disorder (2), migraine with or without aura 1 (2), synucleinopathy (2), specific developmental disorder (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 31.99 RPKM in Adrenal Gland
Total median expression: 648.49 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -96.40217-0.444 Picture PostScript Text
3' UTR -443.401239-0.358 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR025782 - Catechol_O-MeTrfase
IPR017128 - Catechol_O-MeTrfase_euk
IPR002935 - O-MeTrfase_3

Pfam Domains:
PF01596 - O-methyltransferase
PF13578 - Methyltransferase domain

SCOP Domains:
51735 - NAD(P)-binding Rossmann-fold domains
53335 - S-adenosyl-L-methionine-dependent methyltransferases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3A7E - X-ray MuPIT 3BWM - X-ray MuPIT 3BWY - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P21964
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000287 magnesium ion binding
GO:0005515 protein binding
GO:0008168 methyltransferase activity
GO:0008171 O-methyltransferase activity
GO:0016206 catechol O-methyltransferase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006584 catecholamine metabolic process
GO:0007565 female pregnancy
GO:0007612 learning
GO:0007614 short-term memory
GO:0008210 estrogen metabolic process
GO:0009712 catechol-containing compound metabolic process
GO:0014070 response to organic cyclic compound
GO:0016036 cellular response to phosphate starvation
GO:0032259 methylation
GO:0032496 response to lipopolysaccharide
GO:0032502 developmental process
GO:0035814 negative regulation of renal sodium excretion
GO:0042135 neurotransmitter catabolic process
GO:0042417 dopamine metabolic process
GO:0042420 dopamine catabolic process
GO:0042424 catecholamine catabolic process
GO:0042493 response to drug
GO:0043627 response to estrogen
GO:0045963 negative regulation of dopamine metabolic process
GO:0048265 response to pain
GO:0048609 multicellular organismal reproductive process
GO:0048662 negative regulation of smooth muscle cell proliferation
GO:0050668 positive regulation of homocysteine metabolic process
GO:0051930 regulation of sensory perception of pain

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030424 axon
GO:0030425 dendrite
GO:0043197 dendritic spine
GO:0043231 intracellular membrane-bounded organelle
GO:0044297 cell body
GO:0045211 postsynaptic membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LF385111 - JP 2014500723-A/192614: Polycomb-Associated Non-Coding RNAs.
M58525 - Homo sapiens catechol-O-methyltransferase (COMT) mRNA, complete cds.
AK130031 - Homo sapiens cDNA FLJ26521 fis, clone KDN08050, highly similar to Catechol O-methyltransferase, membrane-bound form (EC 2.1.1.6).
AK290440 - Homo sapiens cDNA FLJ76097 complete cds, highly similar to Homo sapiens catechol-O-methyltransferase (COMT), transcript variant MB-COMT, mRNA.
BC000419 - Homo sapiens catechol-O-methyltransferase, mRNA (cDNA clone MGC:8663 IMAGE:2964400), complete cds.
BC005867 - Homo sapiens catechol-O-methyltransferase, mRNA (cDNA clone MGC:4072 IMAGE:2964400), complete cds.
FJ224345 - Homo sapiens epididymis secretory sperm binding protein Li 98n (HEL-S-98n) mRNA, complete cds.
JD076926 - Sequence 57950 from Patent EP1572962.
BC100018 - Homo sapiens catechol-O-methyltransferase, mRNA (cDNA clone MGC:110987 IMAGE:6163659), complete cds.
JD168053 - Sequence 149077 from Patent EP1572962.
BC011935 - Homo sapiens catechol-O-methyltransferase, mRNA (cDNA clone MGC:20006 IMAGE:3503220), complete cds.
M65212 - Homo sapiens catechol-O-methyltransferase (COMT) mRNA, complete cds.
JD187014 - Sequence 168038 from Patent EP1572962.
EF103916 - Homo sapiens catechol-O-methyltransferase transcript variant COMT_v1 (COMT) mRNA, alternatively spliced.
EF103917 - Homo sapiens catechol-O-methyltransferase transcript variant COMT_v2 (COMT) mRNA, alternatively spliced.
EF103920 - Homo sapiens catechol-O-methyltransferase transcript variant COMT_v6 (COMT) mRNA, alternatively spliced.
EF103921 - Homo sapiens catechol-O-methyltransferase transcript variant COMT_v4 (COMT) mRNA, alternatively spliced.
EF103922 - Homo sapiens catechol-O-methyltransferase transcript variant COMT_v7 (COMT) mRNA, alternatively spliced.
CR456422 - Homo sapiens COMT full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.COMT).
EF103918 - Homo sapiens catechol-O-methyltransferase transcript variant COMT_v3 (COMT) mRNA, alternatively spliced.
BT007125 - Homo sapiens catechol-O-methyltransferase mRNA, complete cds.
CR456997 - Homo sapiens full open reading frame cDNA clone RZPDo834E125D for gene COMT, catechol-O-methyltransferase; complete cds, incl. stopcodon.
AB462972 - Synthetic construct DNA, clone: pF1KB4280, Homo sapiens COMT gene for catechol-O-methyltransferase, without stop codon, in Flexi system.
CU013271 - Homo sapiens COMT, mRNA (cDNA clone IMAGE:100000048), complete cds, without stop codon, in Gateway system.
CU680120 - Synthetic construct Homo sapiens gateway clone IMAGE:100016942 5' read COMT mRNA.
DQ893411 - Synthetic construct clone IMAGE:100006041; FLH199492.01X; RZPDo839D1282D catechol-O-methyltransferase (COMT) gene, encodes complete protein.
DQ896732 - Synthetic construct Homo sapiens clone IMAGE:100011192; FLH199398.01L; RZPDo839D1281D catechol-O-methyltransferase (COMT) gene, encodes complete protein.
KJ896624 - Synthetic construct Homo sapiens clone ccsbBroadEn_06018 COMT gene, encodes complete protein.
KR710430 - Synthetic construct Homo sapiens clone CCSBHm_00012502 COMT (COMT) mRNA, encodes complete protein.
KR710431 - Synthetic construct Homo sapiens clone CCSBHm_00012504 COMT (COMT) mRNA, encodes complete protein.
FJ410132 - Homo sapiens membrane bound catechol-O-methyltransferase (COMT) mRNA, complete cds.
CU012983 - Homo sapiens COMT, mRNA (cDNA clone IMAGE:100000144), complete cds, with stop codon, in Gateway system.
HM005355 - Homo sapiens clone HTL-T-42 testicular tissue protein Li 42 mRNA, complete cds.
JD560438 - Sequence 541462 from Patent EP1572962.
JD425722 - Sequence 406746 from Patent EP1572962.
JD135483 - Sequence 116507 from Patent EP1572962.
JD427215 - Sequence 408239 from Patent EP1572962.
JD223381 - Sequence 204405 from Patent EP1572962.
JD424101 - Sequence 405125 from Patent EP1572962.
JD185680 - Sequence 166704 from Patent EP1572962.
EF217321 - Homo sapiens clone A-10 catechol-O-methyltransferase isoform (COMT) mRNA, partial cds, alternatively spliced.
EF217322 - Homo sapiens clone A-16 catechol-O-methyltransferase isoform (COMT) mRNA, partial cds, alternatively spliced.
EF212883 - Homo sapiens clone T-29 catechol-O-methyltransferase isoform (COMT) mRNA, partial cds, alternatively spliced.
JD288378 - Sequence 269402 from Patent EP1572962.
FJ410131 - Homo sapiens soluble catechol-O-methyltransferase (COMT) mRNA, complete cds.
CU674210 - Synthetic construct Homo sapiens gateway clone IMAGE:100020613 5' read COMT mRNA.
KJ901349 - Synthetic construct Homo sapiens clone ccsbBroadEn_10743 COMT gene, encodes complete protein.
EF103919 - Homo sapiens catechol-O-methyltransferase transcript variant COMT_v5 (COMT) mRNA, alternatively spliced.
M65213 - Homo sapiens catechol-O-methyltransferase (COMT) mRNA, 3' end.
JD394919 - Sequence 375943 from Patent EP1572962.
JD103386 - Sequence 84410 from Patent EP1572962.
JD520679 - Sequence 501703 from Patent EP1572962.
MA620688 - JP 2018138019-A/192614: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-6334 - L-dopa degradation
PWY-6342 - noradrenaline and adrenaline degradation
PWY6666-2 - dopamine degradation

Reactome (by CSHL, EBI, and GO)

Protein P21964 (Reactome details) participates in the following event(s):

R-HSA-175983 COMT transfer CH3 from AdoMet to 3,4DHBNZ
R-HSA-379387 methylation of Dopamine to form 3-Methoxytyramine
R-HSA-379464 Methylation of 3,4-dihydroxyphenylacetic acid to homovanillic acid
R-HSA-156581 Methylation
R-HSA-379397 Enzymatic degradation of dopamine by COMT
R-HSA-379398 Enzymatic degradation of Dopamine by monoamine oxidase
R-HSA-156580 Phase II - Conjugation of compounds
R-HSA-379401 Dopamine clearance from the synaptic cleft
R-HSA-211859 Biological oxidations
R-HSA-112311 Neurotransmitter clearance
R-HSA-1430728 Metabolism
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-112316 Neuronal System

-  Other Names for This Gene
  Alternate Gene Symbols: A8MPV9, COMT , COMT_HUMAN, ENST00000361682.1, ENST00000361682.10, ENST00000361682.2, ENST00000361682.3, ENST00000361682.4, ENST00000361682.5, ENST00000361682.6, ENST00000361682.7, ENST00000361682.8, ENST00000361682.9, NM_001362828, P21964, Q6IB07, Q6ICE6, Q9BWC7, uc318cgh.1, uc318cgh.2
UCSC ID: ENST00000361682.11_8
RefSeq Accession: NM_000754.4
Protein: P21964 (aka COMT_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.